NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008471

3300008471: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763759525 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008471 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053193 | Ga0114857
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 2, subject 763759525 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size43056208
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F040149Metagenome162N
F041827Metagenome159Y
F042387Metagenome158N
F043235Metagenome156N
F045567Metagenome152N
F047508Metagenome149N
F053092Metagenome141N
F097490Metagenome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114857_101716All Organisms → Viruses → Predicted Viral3203Open in IMG/M
Ga0114857_104283All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1624Open in IMG/M
Ga0114857_104719All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1505Open in IMG/M
Ga0114857_105548All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1334Open in IMG/M
Ga0114857_106175All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1228Open in IMG/M
Ga0114857_106572All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1170Open in IMG/M
Ga0114857_106605All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1166Open in IMG/M
Ga0114857_107943All Organisms → Viruses → Predicted Viral1016Open in IMG/M
Ga0114857_109747All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium867Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114857_101716Ga0114857_1017162F018385MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPG
Ga0114857_104283Ga0114857_1042831F043235PEGAIAIFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHMEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYYRSHGFEGGRSMASNVLLPGSAH*
Ga0114857_104719Ga0114857_1047191F041827LSCNRDIENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVGVHARVHNDPTYDEYLYEISADRSYIKEE*
Ga0114857_105548Ga0114857_1055482F047508MLGHRLVEGRIKYPYLRRIGEYLRHSFDTEDVGWVVKWSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCDLILSSP*
Ga0114857_106175Ga0114857_1061752F042387MKRIILFFMAGLFLISCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYDNGKLSSVIDEVVISDSGIQYKRVVTREYSYNSSEVLVNENVKYHSESYAYNLKDENFTHTYVLNGENITKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKKIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQNVTTMVYEYNK
Ga0114857_106572Ga0114857_1065722F040149VADEGAKELRWEVLIKEQGIPVLFVEVEAWYDGWVSSSEILRSVGIALEREPRLTPVWSHDSEDAIDYFIYDVFVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0114857_106605Ga0114857_1066052F053092MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHAVQLFGVLGAKELSITTHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELIAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0114857_107943Ga0114857_1079431F045567MVTEDVVHTSTHRVEDALLPVDGDILTPCDGTHIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVMATVDEDTLPTLGDDEGGGAQATVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPTLSSERGCVVERVVR*
Ga0114857_109747Ga0114857_1097471F097490EIRNNTENNYYLLSPIVSIMTKHLQYIGGEMIEGEIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYMEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
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