NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008479

3300008479: Human stool microbial communities from NIH, USA - visit 2, subject 763577454 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008479 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053209 | Ga0114883
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 763577454 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size194179397
Sequencing Scaffolds10
Novel Protein Genes11
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032286Metagenome / Metatranscriptome180Y
F047126Metagenome150N
F059106Metagenome134N
F067720Metagenome125Y
F067844Metagenome125N
F081453Metagenome114N
F084124Metagenome112Y
F090514Metagenome108N
F097172Metagenome / Metatranscriptome104Y
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114883_1000918All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii31146Open in IMG/M
Ga0114883_1000987All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii29263Open in IMG/M
Ga0114883_1001252All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales23503Open in IMG/M
Ga0114883_1002132All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae13243Open in IMG/M
Ga0114883_1003084All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis8693Open in IMG/M
Ga0114883_1003904All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile6587Open in IMG/M
Ga0114883_1006342All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae3917Open in IMG/M
Ga0114883_1015034All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1683Open in IMG/M
Ga0114883_1018527All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1384Open in IMG/M
Ga0114883_1021039Not Available1230Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114883_1000216Ga0114883_10002166F101356VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
Ga0114883_1000918Ga0114883_100091820F090514MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG*
Ga0114883_1000987Ga0114883_10009872F084124LNKQAKAFARTTKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSFITQTAWLFAPKKLLYRKILWALPKPAIFEKIE*
Ga0114883_1001252Ga0114883_10012521F081453MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKSAPGRKCVQ*
Ga0114883_1002132Ga0114883_10021323F097172MKKNVFKKMMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYRYHLEGYDKNGYPVNGFSKTSFYKDLNSLPSIKVGKTTINVPAVTSSVKSVSKEKDNPEYVTYVKFKALKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQVSKTGKKYCLNSIEDSDTIGKYDTLYENNYLARLRTILDNYKTEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQTYVFSVDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDINIEYRK*
Ga0114883_1003084Ga0114883_10030841F059106MHAIVWKIRVILLQTFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV*
Ga0114883_1003904Ga0114883_10039049F047126ISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC*
Ga0114883_1006342Ga0114883_10063424F032286MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI*
Ga0114883_1015034Ga0114883_10150343F067720MASTTYRHLGDVTEMFAAQEQFQHVTKMVCARFRGLTKTYHFAVIGNMVRNAGQLPQPFWLGAACGGGSRSAARCAART*
Ga0114883_1018527Ga0114883_10185271F067844MNTLAAETASAWYLILNRKLQTLPIYIIQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0114883_1021039Ga0114883_10210394F067720MASTTYRHIGDLTDMFAVQEQFRDITKMVCARLRGLTKTYHFAVIGNMVRNAGQLPQPFWLGVAFGGGARG
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