NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008503

3300008503: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159632143 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008503 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052918 | Ga0111013
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 159632143 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size116698126
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4162
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ81
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032313Metagenome180N
F046433Metagenome151N
F054109Metagenome140N
F066860Metagenome126N
F072446Metagenome121N
F077405Metagenome117N
F078842Metagenome116N
F081455Metagenome114N
F085820Metagenome111N
F089055Metagenome109Y
F092229Metagenome107N
F095629Metagenome105N
F099452Metagenome103N
F099454Metagenome103N
F105379Metagenome100N
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111013_100002Not Available133457Open in IMG/M
Ga0111013_100603All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes17912Open in IMG/M
Ga0111013_100886All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA41614657Open in IMG/M
Ga0111013_102479All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip27613Open in IMG/M
Ga0111013_103620All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis5645Open in IMG/M
Ga0111013_104798All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ84432Open in IMG/M
Ga0111013_104864All Organisms → cellular organisms → Bacteria4378Open in IMG/M
Ga0111013_105398All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4163991Open in IMG/M
Ga0111013_105747All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella3782Open in IMG/M
Ga0111013_106114All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3585Open in IMG/M
Ga0111013_107200All Organisms → Viruses → Predicted Viral3111Open in IMG/M
Ga0111013_107254All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae3089Open in IMG/M
Ga0111013_107959All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas2861Open in IMG/M
Ga0111013_113873All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1723Open in IMG/M
Ga0111013_118034Not Available1337Open in IMG/M
Ga0111013_122606Not Available1067Open in IMG/M
Ga0111013_128157Not Available857Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111013_100002Ga0111013_10000253F054109MVGRPKSKKGTKVHTAFKIYPTDKERAQNMADKLGMSLSAYINKAVLEKVERDEKSEN*
Ga0111013_100603Ga0111013_10060315F105379MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLDKITQLQPAADNPEIAIHRPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY*
Ga0111013_100886Ga0111013_10088616F099452MDKTYAELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLNDLRKTSWYKKWFTYDQENSRLIDLSKFNFRSLERFEKVEYLKDVEHYDFEGVIEVDSYSLYDILAEENGLNLFCFAAENILLNHGFFNNTDYQLYDVPEEYIDDQEVCMYMCLLNKDNIDFIDKDTYEDTVLWDIVKDRLFGYVYWSIRDSIEEDTRTRAR*
Ga0111013_102479Ga0111013_1024796F105380MPILELDASQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSREESYFPNGKRLKLKRLCKGSMMSDVSSSDYDAWRNNAITRASQFVNKFVSARGNSDLDFVGSALRNKVPSHNIKKCAVFLGKITKEQENVNTYEEFMEWTKNTKWFK*
Ga0111013_103620Ga0111013_1036204F089055LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAEQRDNSKVNPELGKTAIDIKMDFADNEAVDLCNQTLGSYGKSLDYINNNPLKTVQAIGSSLQLFREDKTKESCK*
Ga0111013_104798Ga0111013_1047983F095629MMRELIICVCLLGCFGIANANNIEQPKEVKIVHNDDSVALHKKIHQLEKRIERLEELLKKEGK*
Ga0111013_104864Ga0111013_1048644F078842MIISSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHNESSVNTLFRTSYIKYSKESNDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCVIGGKGWLGMADSARIRQMINSIELDVYEVNS*
Ga0111013_105398Ga0111013_1053985F092229MNEEYRFKHIPEVILRNVKFIRENNIDIGTGDDVLECMMDINPVLRQRIYDDYDLAKDVAERRFHTTIEELDLTTILQKCTTRPYIAILNNIYFRYFNSKLIDDMFKLGESTKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLFYYLEDYLEEYVNTGKFTYGSQEYHTIKEFKYLPLMNVLTQLTRSNPSGYVLNHKLELVKG*
Ga0111013_105747Ga0111013_1057472F032313MACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK*
Ga0111013_106114Ga0111013_1061144F046433MIELPASPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPLFMKSRYKTTEYEAINDFVQFIEMTKHYLPDYMEYCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKVLFLDDWIISGDQVKKRIAGFAVDNDPESHEASVLVMAASSEYIDNGIVADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGENFDGLSRFRQLLERE*
Ga0111013_107200Ga0111013_1072005F081455KSKKDIPPVEEIGAETVDIIDAAEEAIQQPLQNTDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSTFNPEGDPNKRLRYELIRHQGREKDLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK*
Ga0111013_107254Ga0111013_1072543F072446MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVEHHYHSIPGIVPERTTYRVPVIPRSVEDKTKKEYNDMELGKEAHLVFRATVHGDTINRQKRELEAISRQLNALTLTSIGTSPVLCGVKSIEAVGVAERGNTYDLSREMKLRIRDYFGRVKYSSSGIVTLNCENTESMTAKYVVPLARIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPNKSVLENYQQYGFEREATYFTTLWPLPDYKYNEREW*
Ga0111013_107959Ga0111013_1079594F099454MKASKLLWAVIMALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGILDSKSDTYLTKKVDTLSNGDFRISYDWVSFTVREKKSVIDVEVQKNETGEDRSVKFVAQANH
Ga0111013_113873Ga0111013_1138733F066860MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE*
Ga0111013_118034Ga0111013_1180342F085820MLFLATTFFSCETGEPAPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTHADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLANGTEIEKELSKNRTK*
Ga0111013_122606Ga0111013_1226061F054109RGMKVHTAFKIYPDDKARAQAMADKLELSLSAYINKAVLEKVARDEKSED*
Ga0111013_128157Ga0111013_1281572F077405QGRALPTELFPRLLVAKQRGVFYGFIVLCQIKFVKKVFDWLKIIQK*
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