NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008504

3300008504: Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008504 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053196 | Ga0114860
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size92880353
Sequencing Scaffolds5
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2792
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040149Metagenome162N
F043235Metagenome156N
F054109Metagenome140N
F076191Metagenome118N
F094007Metagenome106N
F097527Metagenome104N
F098763Metagenome103N
F103430Metagenome101N
F105376Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114860_100001All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis703064Open in IMG/M
Ga0114860_100007All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279371140Open in IMG/M
Ga0114860_100022Not Available199339Open in IMG/M
Ga0114860_100086All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27986900Open in IMG/M
Ga0114860_110569All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1461Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114860_100001Ga0114860_100001116F105376MNEKSEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQSQVRRK*
Ga0114860_100001Ga0114860_100001140F103430MEQITIKAFIGSNNKTKKLEVDKIISTVNTNHEAFTLQYPVIGCWRGETEQTAILYLSDERSKVMNTLGELKEVLDQEAIAYQIENKINLI*
Ga0114860_100001Ga0114860_100001144F076191MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPMISVRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA*
Ga0114860_100001Ga0114860_100001360F094007MKSKTVEVLELARPNRAGIIDVVDSDGNVVPLDYSGEDFAPDVNSYSGKDFTKRNRIIVEMCDLFGRIRRRAGFAEYHRGRGNYDRARRIERNRGSDISEVGRLAINACESCPLKLDCELYGKLGEAVLNDVLDYKKVRTATSLTKAGKKRSSWNKGCIDNDA*
Ga0114860_100007Ga0114860_100007137F043235MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRHPEGAVALFIGLAHRDQCDIDRIDTIPKEIWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEDFYVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGVKGGRSMASNVLLPGSAH*
Ga0114860_100007Ga0114860_10000771F098763MDRRTSLRVLSTALYLATKLFKAVVWTTISYDSSDEVEGKGGMNAIPTAVDE*
Ga0114860_100022Ga0114860_10002242F054109MVGRPKSKKGTKVHTAFKIYPVDKERAQNMADKLGMSLSAYINKAVLEKVERDEKSEN*
Ga0114860_100086Ga0114860_10008626F040149VADEGAEELRWEVLIKEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPWLAPVWSHDSEDAIDYFIYDRFVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0114860_110569Ga0114860_1105691F097527MIYFKMEKIGNSTYNKEKKTRSENLVFNTIPAAGVEPARPCGH
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