Basic Information | |
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IMG/M Taxon OID | 3300008509 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118189 | Gp0131420 | Ga0110930 |
Sample Name | Freshwater microbial communities from catchments in Singapore - Site BB |
Sequencing Status | Permanent Draft |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 118806421 |
Sequencing Scaffolds | 11 |
Novel Protein Genes | 11 |
Associated Families | 11 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → unclassified Methyloversatilis → Methyloversatilis sp. XJ19-13 | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | 1 |
Not Available | 6 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp. CIP 64.7 | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Freshwater Microbial Communities From Catchments In Singapore |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities From Catchments In Singapore |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | freshwater biome → drainage basin → fresh water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | Singapore | |||||||
Coordinates | Lat. (o) | 1.3 | Long. (o) | 103.8 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004260 | Metagenome / Metatranscriptome | 446 | Y |
F007855 | Metagenome / Metatranscriptome | 343 | N |
F007861 | Metagenome / Metatranscriptome | 343 | Y |
F009805 | Metagenome / Metatranscriptome | 312 | Y |
F019123 | Metagenome / Metatranscriptome | 231 | Y |
F022892 | Metagenome / Metatranscriptome | 212 | Y |
F027444 | Metagenome | 194 | N |
F031850 | Metagenome | 181 | N |
F050228 | Metagenome | 145 | Y |
F091594 | Metagenome / Metatranscriptome | 107 | Y |
F100421 | Metagenome / Metatranscriptome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0110930_1040556 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → unclassified Methyloversatilis → Methyloversatilis sp. XJ19-13 | 929 | Open in IMG/M |
Ga0110930_1049384 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | 646 | Open in IMG/M |
Ga0110930_1062008 | Not Available | 642 | Open in IMG/M |
Ga0110930_1062952 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 516 | Open in IMG/M |
Ga0110930_1112170 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 772 | Open in IMG/M |
Ga0110930_1120232 | Not Available | 512 | Open in IMG/M |
Ga0110930_1131147 | Not Available | 544 | Open in IMG/M |
Ga0110930_1144968 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp. CIP 64.7 | 513 | Open in IMG/M |
Ga0110930_1189541 | Not Available | 512 | Open in IMG/M |
Ga0110930_1203605 | Not Available | 638 | Open in IMG/M |
Ga0110930_1229731 | Not Available | 539 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0110930_1040556 | Ga0110930_10405565 | F091594 | MSENKITHYCLGNGEPKCGGCKQEMNWQTLNQMPDALRKTLQDQAQRINDTNCILSGRPWYVGA* |
Ga0110930_1049384 | Ga0110930_10493843 | F009805 | MVIDIAVGEWMNTLQNRMDSAMDGDCFCLPTPMHLHAFFLVKEQSFPNKDLKVELKQLVDA* |
Ga0110930_1062008 | Ga0110930_10620081 | F027444 | MPAGRSGRRQIPPQDVARYWQSRAAGMAIKDAAAVAGVHVNTASKWEAKRRKALAEIKLAEVEVGAVRKKQGGVQAEAWKHAMDVADLPPVIPYER |
Ga0110930_1062952 | Ga0110930_10629521 | F004260 | MAIEDRLLGKLKAEQQVFALEALKRPVERDAFEYGYRVGMVAGYEAAIKALLDLLDDERHGD* |
Ga0110930_1112170 | Ga0110930_11121703 | F019123 | MVDSKPLTQEEIIKIYKAAFGNGNAVLTLDRIFKFARLLEQAHGVKDG* |
Ga0110930_1120232 | Ga0110930_11202322 | F007855 | TDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREAAWFGWFAKKYDGASHAERAELMKKYAKIGDVWGVVSFFLLSSEGYLQILSDYSKHLTKMAQGQ* |
Ga0110930_1131147 | Ga0110930_11311471 | F022892 | KVNKIINPIANNIGVFIVINPPYNVAIQLKILIPVGTAIIIVAAVK* |
Ga0110930_1144968 | Ga0110930_11449682 | F007861 | CNVTYGIIRITMVDKTLEEVKRGEQASKILENPIYIEAVTKVKESLISSMANSPLGDEKTHNRLVIALQLLNQINKQLTDVMQTGKFAAIQTDRPKFKIFG* |
Ga0110930_1189541 | Ga0110930_11895411 | F050228 | DVPLVNPDRDKAWEAFIKRRDVKAMMKGKEDFKFPLDGSYDLWCIVWEKAWHEGFVEGWKAAGGKTREP* |
Ga0110930_1203605 | Ga0110930_12036051 | F031850 | MFDIMHQDDEDYYNAKVKAVVFINQDNSITVKFTGFEDKEHSAIFSSWLMMLLNIENAIINDSKSKAIH* |
Ga0110930_1229731 | Ga0110930_12297311 | F100421 | LNSSFQGAIGPNIIFREEFYPLRFAEDGTMPAPEIELLLPDSGYSTPNATRQTVINPAYASAPIGVAFLIGYNPYEQIDVGPPPAEFTGASINGKRFNQLTWNGEVRLTDNVLVNYGSNNLDTNKYGEFLQLIADTVLGIIGNTPRNVIPIIYRRQIAPSLFV* |
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