Sample 3300008514

3300008514: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160765029 reassembly

Overview

Basic Information
IMG/M Taxon OID	3300008514 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052933 \| Ga0111023
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160765029 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	109748450
Sequencing Scaffolds	22
Novel Protein Genes	26
Associated Families	25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F047508	Metagenome	149	N
F054109	Metagenome	140	N
F054110	Metagenome	140	N
F055792	Metagenome	138	N
F067846	Metagenome	125	Y
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F085820	Metagenome	111	N
F089057	Metagenome	109	N
F095633	Metagenome	105	N
F098763	Metagenome	103	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F099454	Metagenome	103	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103435	Metagenome	101	N
F105379	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0111023_100069	All Organisms → cellular organisms → Bacteria	86750	Open in IMG/M
Ga0111023_100116	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	67239	Open in IMG/M
Ga0111023_100157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	53807	Open in IMG/M
Ga0111023_100195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	46982	Open in IMG/M
Ga0111023_100197	All Organisms → cellular organisms → Bacteria	46857	Open in IMG/M
Ga0111023_100251	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	41184	Open in IMG/M
Ga0111023_100267	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	39314	Open in IMG/M
Ga0111023_100312	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	34006	Open in IMG/M
Ga0111023_100464	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	25611	Open in IMG/M
Ga0111023_100632	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	20388	Open in IMG/M
Ga0111023_100831	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	16100	Open in IMG/M
Ga0111023_101696	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9206	Open in IMG/M
Ga0111023_101701	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9188	Open in IMG/M
Ga0111023_101716	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	9138	Open in IMG/M
Ga0111023_102911	Not Available	5736	Open in IMG/M
Ga0111023_106787	Not Available	2531	Open in IMG/M
Ga0111023_107210	Not Available	2380	Open in IMG/M
Ga0111023_108266	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp.	2092	Open in IMG/M
Ga0111023_109332	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	1856	Open in IMG/M
Ga0111023_115264	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1133	Open in IMG/M
Ga0111023_118780	Not Available	926	Open in IMG/M
Ga0111023_119960	Not Available	879	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111023_100069	Ga0111023_10006957	F033081	MYTDITVVHRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRLKFSILAVGLIIMTIATIKMLLFVPGLNQSAVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWHERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0111023_100116	Ga0111023_10011678	F105380	MSILQLDASQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSREESYFPNGKRLKLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVLSHNIKKCAVFLGKITKEQENVNTYEEFMEWTKNTKWFK*
Ga0111023_100157	Ga0111023_10015734	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKEKQLYKKESEYSSTKQHEVLLFLVRTYKGGE*
Ga0111023_100195	Ga0111023_10019518	F067846	MSIIAEWERQEFNKWDKQCSKEDDYNRAVEMEIEAIKEDIANNDSDAICAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND*
Ga0111023_100197	Ga0111023_10019717	F103433	MKEWSKNKPGVVFFFVVWFVLSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVSVFAATVVAFFGAYWVNFMSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSAIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0111023_100251	Ga0111023_10025125	F099452	MDKTYEELLQETLSKIYELKDLDNRDRGKALTIFIGERLNRELLLSSRHIFTLYSDIINLDDVSLLTDLRKTDWYKDWFTDDRNNANLINLSRFNFKTLARFEKEEYLRNVEQYDFEGVVQVDGYSLFDTLIEDKDVELFKLAAENILISHGFFDNTDYNFYDIPDEYMGDKEVCAYMCLLNIENMDFVDKKTLDTTVLYNIVKDRICGSIYFTLFDSLNKDTRTNAR*
Ga0111023_100267	Ga0111023_10026721	F095633	MRNYENSTEVGCREGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGGVPFGSWDEFAKAVQEMAAHIYEPIPVKINTKRLIATAFLDDGGEMSVEEHSVPEEVFIDLSRTRCVVDEDRSHKSYEFTCPVLKKFPDGELYPIREAYVISAIDVNGSQEVDFKII*
Ga0111023_100312	Ga0111023_10031236	F099453	MLRRKDMNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVAGYLDKKTNIARTTPYGCIYVSLEAFADTVEAYKFIDTDQIRNLALEIIIHELTHVDQLIDYRYIKFNNGYREEIERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLIGLSDVTYSFKNPAVIAMSKLEHMIGKKFKEFNSNDIEIVYVDRLKNYYKIPVCVNRMYQNSQNLNDLGERLLNDKQYTIEYMEYGNSKLVIKITQGV*
Ga0111023_100312	Ga0111023_10031239	F080166	VYSLANFENYNKVVEVIFELNYKLTLKMEVTFNSILKRLGNDVRENFHTEYIVNSGSLTTNVKYRYRMKLSPKGEQTCVYIDWDNYDDLFNVLEESIKICDPENPRTPFKRTYSDKGDLLDIRCNSLQVKYQHLNDRFGNTIDLIPFVLVDEQSGLLTEAIRFRFNNELVYDVPISRLKGFRRFLMTYNPLLHAGAMARYMAMTPLLGSNRQNMMRS*
Ga0111023_100312	Ga0111023_10031240	F081455	TKLNLKFQQEREKRNAIEDSKALIRHLDPDYAEYELESLNPVEEIDAQNVEIIDAVDAIQQPLENKDAGIAVNFSQMINQPAIQEEVAKVVTSVPEQGEPKIKVVFPQNEHILGSYVDYDSFNKIKESNADTIIRSVRVLNFKMSDPNAVAAFNNFIMKFNPECDPNKRLKYELIRHQGREKDIVVRLSTVVNDVKYYADIYADLNKIDLDHHLISSAKKR*
Ga0111023_100464	Ga0111023_10046415	F089057	MTNIIPIIAKKYNRKGDTSGSLKSLVSDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSDDIYIKIFGNVLTFLNMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGIFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRSVLSRYLSNM*
Ga0111023_100464	Ga0111023_10046424	F103435	MKFVFCTEPIYQYYRAHLYDADKDKLDKQLLVEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPEFENIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVGNDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDNIDFSPEGAQIAYLQRHTYLALEAKSTVEPLRIWYPFDMNSYTNALE*
Ga0111023_100632	Ga0111023_1006329	F099454	MKASKLLWAVVMALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVRENKSVIDVEVQNNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK*
Ga0111023_100831	Ga0111023_10083110	F098763	MDGRTSLRVLSPALYLATKLFEAVVWTTISYDPSDEVEGKGGMNAIPTAVDE*
Ga0111023_101696	Ga0111023_1016963	F047508	MLGHRLVEGRIKYPYLRSIWEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGATTVEDQDFHKVLYYMVRCELILSSP*
Ga0111023_101701	Ga0111023_1017014	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLASLGTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDESDDGTEAGTTWSRYPLETLQKEGYILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGEAIESVALPDVTRLDESITLQGIGSLRDLLMTPDVSETDHLQTSREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0111023_101716	Ga0111023_1017164	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLGKITQLEPSGDNPEIAIHKPIVSVFNWDAEYVKACMNSLREYQIDDNIITRTEEFHNTDCYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIVVNQSMLFLPY*
Ga0111023_102911	Ga0111023_1029112	F103432	MKLIHSLFSLPLLLVLGGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVTMDSTTMFRRHNLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFHESIGIAPRLFGVKELSVVGIDRKGKPRDLGNYSCPLLQGKRRNVNYRTREGIFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWQQPAAGCTKLRFTLTLVDGRSLVAEVPLR*
Ga0111023_102911	Ga0111023_1029113	F080164	MVGLTLCAAPQVTLRERANAFPLITEKDASEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGILTVRVLVVGDTVAVHQDLMDDFAKHCRATLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKVEKPLLYKGQAGQLVLCEYYESHRGDLFLDVANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS*
Ga0111023_106787	Ga0111023_1067873	F054109	MLGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDMSLSSYINRAVLEKVERDEKSEN*
Ga0111023_107210	Ga0111023_1072102	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPIRPFHGDTLAQIAWNFRFIVEHHYHSIPGIVPERTTYRVPVIPRSVEDKTKKEYNDMELGKEAHLVFRATVHGDTINRQKRELEAISRQLNALTLTSIGTSPVLCGVKSIEAVGVAERGNTYDLSREMKLRIRDYFGRVKYRSSGIVTLNCENTESMTAKYVVPLARIREDELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPLPDYKYNEREW*
Ga0111023_108266	Ga0111023_1082662	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVANECHFHRTWLTQGVKAIRVVRTHADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSEKGKK*
Ga0111023_109332	Ga0111023_1093324	F068942	MIRKILSLPTLALCFTLCTALFAGCGENYDGSVTEVHWSNVKNPEYGNAINITLKAEGETFTTVGNHSWISFSGSVSTLDTFTHHRFSEVDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFDFSIEVTPPAMYIFKVRQPALPAKAQ*
Ga0111023_115264	Ga0111023_1152642	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKCLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEVLREFDKLVIPEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKNDDKIINQLSCDFLEYIKILSSPVFCDNLRKALVRCSDNHKQVILNRSTLNA
Ga0111023_118780	Ga0111023_1187801	F032313	MYRFLILIFALTLMACDNNTPQEKPHEQEKYEVPVPKPQFDEVGERIWYGKTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVILLHRQGINVNHVDTVNYVYDEVGNEIVLEGTGMRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEEK*
Ga0111023_119960	Ga0111023_1199602	F068942	MIRKILSLPTLALCFTLGSAFFAGCDEGYIKNTETKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFSEVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFDFSIEVTPPGMYIFKVRQPALPAKAR*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008514: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160765029 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences