NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008519

3300008519: Neotropical army ants gut microbial communities from Monteverde, Costa Rica - Neivamyrmex summichrasti Gut microbial communities of Neivamyrmex summichrasti



Overview

Basic Information
IMG/M Taxon OID3300008519 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0085487 | Gp0055943 | Ga0111037
Sample NameNeotropical army ants gut microbial communities from Monteverde, Costa Rica - Neivamyrmex summichrasti Gut microbial communities of Neivamyrmex summichrasti
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size107763316
Sequencing Scaffolds0
Novel Protein Genes18
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationMonteverde, Costa Rica
CoordinatesLat. (o)43.073Long. (o)-84.809844Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083664Metagenome112Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111037_101637Ga0111037_10163722F083664MLDINFAKTEKELAEQLGVTQQAISVRLHTMGKVQKEGR*
Ga0111037_104262Ga0111037_1042629F083664LQVLLDINFAQTEKELAKQLGVTQQAISVHLHTMG*
Ga0111037_104315Ga0111037_1043157F083664LQALLDINFAQTEKELADQLGITQQAISVRLHTMEKVQKEGR*
Ga0111037_105641Ga0111037_1056412F083664LRARHPQKIETDELQALLDINSAQTEKELADQLDVAQQAISVRLHTM*
Ga0111037_106439Ga0111037_1064394F083664LQALLDINSAQTEKELVKQFGVTQQAISVRLYTMGKVQKEDK*
Ga0111037_106708Ga0111037_10670810F083664LQALLDINSAQTEKELAEQLGVTQQVIPLHTIGKVQKEGR*
Ga0111037_107578Ga0111037_1075783F083664LQALLDINSAQTEKELAEQLSITQQAISVRLHTMGKV*
Ga0111037_107709Ga0111037_1077094F083664LQALLDINSAQTEKKFAEQLGVTQQAISVRLHTMRKV*
Ga0111037_107964Ga0111037_1079641F083664LQALLNINFAQTEKELAEQLDVTQQAISVCLYTMEKVQKEDR*
Ga0111037_108014Ga0111037_1080141F083664MDELQALLDINFAQTEKELTEQLGVMQQTISVHLHTMGKVQKEYR*
Ga0111037_109030Ga0111037_1090301F083664LQALLDINSAQTEKELAKQLGITQQAIFVRLHMMGKVQKEGRFR*
Ga0111037_109880Ga0111037_1098803F083664LQALLDINSAQTEKEFAEQLGVTQQAISVRLHMIGNV*
Ga0111037_110981Ga0111037_1109813F083664LQALLDTNFAQMENEPAEQLGITQQAISVRLHMMGKVQKEGRMGSA*
Ga0111037_111284Ga0111037_1112842F083664LQALLDINSAQTEKELAEQLNVTQQAISVRSHTIGKIQKKGRFA*
Ga0111037_114567Ga0111037_1145672F083664LQILLDINSAQTEMELAEQLGVTKQAISVRLHTIGKVQKEG*
Ga0111037_115080Ga0111037_1150802F083664MNDDAGRPQKIEMNELQGLLDINSAQIEKELAEQLGLTQQAISVRLHTMGKV*
Ga0111037_120277Ga0111037_1202772F083664MLDINSAQIEKELSEQLGVTQQAISIRLHTIGKVQKEDR*
Ga0111037_120279Ga0111037_1202792F083664MLDINSAQTEKELAEQLGVMQQAISIRLHTIGKVQKEGR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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