NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008537

3300008537: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765337473 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008537 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052938 | Ga0111051
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 765337473 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size152506795
Sequencing Scaffolds20
Novel Protein Genes20
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2792
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 4731
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp.1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033081Metagenome178Y
F041827Metagenome159Y
F046433Metagenome151N
F051213Metagenome144N
F061926Metagenome131N
F064819Metagenome128N
F068942Metagenome124N
F072446Metagenome121N
F076191Metagenome118N
F077404Metagenome117N
F077405Metagenome117N
F078842Metagenome116N
F084342Metagenome112N
F085820Metagenome111N
F089055Metagenome109Y
F092230Metagenome107N
F095633Metagenome105N
F097490Metagenome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111051_100018All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae232951Open in IMG/M
Ga0111051_100037All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279155118Open in IMG/M
Ga0111051_100262All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae54836Open in IMG/M
Ga0111051_100293All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27950529Open in IMG/M
Ga0111051_100801All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales25177Open in IMG/M
Ga0111051_100862All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria23891Open in IMG/M
Ga0111051_101219All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae17765Open in IMG/M
Ga0111051_101342All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 47316366Open in IMG/M
Ga0111051_101376All Organisms → cellular organisms → Bacteria16005Open in IMG/M
Ga0111051_101684All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae13101Open in IMG/M
Ga0111051_102129All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis10714Open in IMG/M
Ga0111051_105521All Organisms → cellular organisms → Bacteria4617Open in IMG/M
Ga0111051_106995All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3674Open in IMG/M
Ga0111051_109548All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp.2698Open in IMG/M
Ga0111051_110392All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella2479Open in IMG/M
Ga0111051_110878All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2367Open in IMG/M
Ga0111051_112049All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae2118Open in IMG/M
Ga0111051_118446All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1341Open in IMG/M
Ga0111051_118614All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1328Open in IMG/M
Ga0111051_119435Not Available1264Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111051_100018Ga0111051_100018158F097490MFLKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPFVDAMADHGLNHVTSEMIEGQMHYKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0111051_100037Ga0111051_10003735F051213MRVSKILWAAVMALTFVFTSCDPFSKNEPIVEGDVDKYFDSNAQRKSFRVLTAEGKPYNHKVDWHIVGIMVPYSDTYLTKKVDTLSNGDLKISHDWVSFTVRENKSIIDVEVQKNETGKERSVTFRPSNSYKQAYLPKIRVIQRAN*
Ga0111051_100262Ga0111051_10026229F061926MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCILNYFYILPEKPQIEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0111051_100293Ga0111051_10029314F084342LRGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWVHRRHILGICKEE*
Ga0111051_100801Ga0111051_10080128F064819MILKDNQGKDRIKFLDIVRLNKEEPVFVKMKVRISTETMVSEEDLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQKLKKI*
Ga0111051_100862Ga0111051_10086230F076191MKIIAENPAEEALLWRIKALSDELVNQDNRSTDMPMWTILDNNKAGKDYGAVTYFTGKAAERHIEENDHHYDNPTIYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA*
Ga0111051_101219Ga0111051_1012192F041827MKHFLSALALGCLLLSCNRDLENNETPAPQNEKLVLLDELREGSTITFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDSQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVGIHARVHNDPTYDEYLYEISADRSYIKDKK*
Ga0111051_101342Ga0111051_10134211F077404MNILKTAFAFFFALCFMMGANSYAQKTESINAEASKRELKRNAIYIPPALEEYADTILLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIIFTNYLVVLGDTYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGKTTLYLYFLMTDSVALNFDTEVLPYIKGVFRFNRVQ*
Ga0111051_101376Ga0111051_1013766F033081MAWLFGRAMPQDTRPTFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSAVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGDLTNYTPSQKILHKIKATRYEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHIMNIWYNFATGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0111051_101684Ga0111051_1016847F092230MRQAHKRTVDKLKAYLLKVFFPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAHGEGSVEVSDSTSTGEVQNTEGKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMAVGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV*
Ga0111051_102129Ga0111051_1021296F089055LKVEKMNSTPECVTKTPEIEARKKEVRKKLDTIFSDAERRDNSKVNPELGKTAFDVANIPNNEAVDLCNQALGGYGKSLDHINNGPLEIVQTIGISLQRLREYKTEGSCR*
Ga0111051_105521Ga0111051_1055216F078842MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEVKKTYDEALREFDKIVIPEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKNLSSYVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMVNSIELDIYEVNS*
Ga0111051_106995Ga0111051_1069954F078842MMISSIYKTVDNDGLIAHIYEHLLAQYVLKNLQDNKFFVLSDIILSAKTYGDTCFMDAELYDPEAKKTYDEALREFDKLVIPEDDILRAASECGIEMNRSIVEVDRSELSKKLREVQISPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVVQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGSLKKDDKIINQLGCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSVLNAILGGCVIGGKGWLEMASSAQIRRMINSIELDVYEVDL*
Ga0111051_109548Ga0111051_1095484F072446MRKHKKNKFNPPTHPQMKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFNGDTLAQIAWNFPYIVEEHYHSIPGILPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKEFETLARQLHALTLPTVGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYKSRRKYDSGRIVTLECEDTESMTARYVVVLGEIRKTELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTMWPLPEKEIER*
Ga0111051_110392Ga0111051_1103922F068942MIRKILSLPTLAFCFTLGSAFFAGCNEDYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSDVSTLDTFTSHSFSEADKDTAYYKDIVIYLTRNKRERTTTLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ*
Ga0111051_110878Ga0111051_1108781F095633MRNYENSTEVGCREGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFIDLSRTRCVVNMDRSHKSYKFTCPVLKKYPSGELYPIREAYVISAIDVNGSQEVDFKVI*
Ga0111051_112049Ga0111051_1120492F077405VVGWQGRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKVRLK*
Ga0111051_118446Ga0111051_1184462F046433MIELPTSPDALSELSPVAPPKLLLQAQDANRDNLMVYVKADDYLRTETSDPSFMKSRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRSELVFLGMSELHFAATALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKDEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQVEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0111051_118614Ga0111051_1186142F089055LKVEKMNSTPECVAKTPEIEAREKLAAIFSDAEQRDNSKVNPELGKTAIDIENTSRINSADNEAVDLCNQTLGSYGKSLDYIRNNPLKTVQTIGISLQRLREGETEERCK*
Ga0111051_119435Ga0111051_1194351F085820MKSSFLTLFAMLFLATTFSSGETDEPAPRATWGEIVNPIKAFMYPRDLEVSEDQYDSRRWHILVVPDSTKSSFAPTSKSTPAEVARYKELSRLVGNPTEPVVNECNFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTYKQIFDCHFKCGDRSIFAKPLGEVVEADYLWLPGIDEFGLVTPPNPDHLKQRIVLRLADGTEIEKELSAKGKK*
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