NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008541

3300008541: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 604812005 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008541 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052941 | Ga0111054
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 604812005 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size149202110
Sequencing Scaffolds12
Novel Protein Genes17
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2793
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae2
All Organisms → Viruses1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
Not Available1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F045567Metagenome152N
F051211Metagenome144N
F070224Metagenome123N
F076191Metagenome118N
F094006Metagenome106Y
F095630Metagenome105N
F098763Metagenome103N
F101360Metagenome102N
F103431Metagenome101N
F103434Metagenome101N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111054_100005All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279356710Open in IMG/M
Ga0111054_100006All Organisms → cellular organisms → Bacteria337530Open in IMG/M
Ga0111054_100008All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279246999Open in IMG/M
Ga0111054_100019All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279205566Open in IMG/M
Ga0111054_100025All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae182324Open in IMG/M
Ga0111054_100053All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae118145Open in IMG/M
Ga0111054_100172All Organisms → Viruses55826Open in IMG/M
Ga0111054_100276All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43855Open in IMG/M
Ga0111054_106927Not Available3612Open in IMG/M
Ga0111054_107686All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3250Open in IMG/M
Ga0111054_112496All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1939Open in IMG/M
Ga0111054_118541All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae1262Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111054_100005Ga0111054_10000540F098763MDRRASLRILSPALYLATKLFEAVVRTTISYDPSDEVEGKGGMNAIPTTVDE*
Ga0111054_100006Ga0111054_100006204F095630MRYSPLYKTSKDNGLLAHVYEHLLAQYILKYLQDRGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRVQSSDWRQQSEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKRITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSHNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI*
Ga0111054_100006Ga0111054_100006234F051211MRVKKAIKIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHVLSLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS*
Ga0111054_100008Ga0111054_10000867F094006MRGTLEPTGPTGALYESTVCVEAHIGYLQAGSIARLALFAFGGRHLLAVAEFGAEAPHAIDMYDIAVCEPLSELFAEELEYAFNFGA*
Ga0111054_100019Ga0111054_10001958F045567MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEMPSLSRERGCVVERVVR*
Ga0111054_100025Ga0111054_100025120F022002MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIIRAEGTQAGSDEQAYAVKGLKYARRSTLLAGLYFYKGHLRRIFFIFDDLDVLEQIESELEDKYGMMIESEGTSKSKGKGFFDAFTTLEVVRNFEYEGHSMFKDAYIAYTDEELDRAHSAEKESEI*
Ga0111054_100025Ga0111054_100025121F022002MKNIYSPSSRSMSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENEI*
Ga0111054_100025Ga0111054_100025122F022002MSRRLALTLGLLLALLLSLPSYAQDGRSKVPINRTISGFTLGVTTPAEARAIIQLQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLRSIYFGFDGWDVLEQIESELEDKYGKMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEN*
Ga0111054_100053Ga0111054_10005394F070224MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKTRGRKIRTRDWVKVDYSNRNNLIIIGFGDSSVIENLFVYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSLGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYMDYNHPEAYHPGICIIH*
Ga0111054_100053Ga0111054_10005395F070224MKRLLFLLLTLLHCSAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKADYSNQNNLIVRKVGGSLIIENRFAYYAAGFPEMEEYELYYKGTGEEITKEDFDAIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHLHLFVVEHDKKADRYYKYRIALVIYMDYDHPGICIIH*
Ga0111054_100172Ga0111054_10017225F105377VRAEVRDFNELPLLTPEEAFERAREMGWNRPLFDHGYRVRGLADWKSIETLLRQYDAEDAVIASFGLKRFEEIFDALAMLSERGWNLWQTVANVYVGGELRAVPAIRAHYRGD*
Ga0111054_100276Ga0111054_10027618F103434VVEVTLAVVKEGRTGRRFERGDTFTIDKVLVQPSAGNALRATENRVIRGDLTDETTLKIFGTGRKWPGGPHSWVKIVKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0111054_100276Ga0111054_10027647F101360MNKEDALRRAAVAAHIAKVASQEKKRALAELEEVMAPGDTSRPMIDGNQIGTVSVSIPAPKYQVVNEKALVAWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVVQGDPRISVRISAAQAEAIQELIASGDIRMIEVGDD*
Ga0111054_106927Ga0111054_1069276F076191MKIIAENPAEEALLWRIKALSDEVVRQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAERHIEENDHHYDNPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA*
Ga0111054_107686Ga0111054_1076862F101360MSKENALRKAAIAAHIAKVASQEKKKALTELEEYMAPGDTSKPMVDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRELISTGDISILEIESGDA*
Ga0111054_112496Ga0111054_1124961F095630MYSSLYKISKDNGLLAHVYEHLLAQYVLKYLQDKGFFISSDITLTAKTYGDTCFMDAKFHNPEAQDAYNEALRLFDKRDIPGSAALRAAAECGIEMNRLVTELVQDKLLHKLSSVQSSAWRQQSDITYRKADDKSSVNTLFCMPYIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVIQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYMQFLSASSFCDNLQAALVRCSHNYEQVLLGRDTLNSILGGCVIGGEGWLKMADNKLIGQILKAIEIDVYDI*
Ga0111054_118541Ga0111054_1185413F103431MIDLDALVVRMLFFIQLFLQGIAWRVAIAHFLYAERRNAAAAAFDGAFGENIADCHAEDDNDKNTESQKEGFHVCIPRG*
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