Sample 3300008561

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300008561

3300008561: Human stool microbial communities from NIH, USA - visit 2, subject 159713063 reassembly

Overview

Basic Information
IMG/M Taxon OID	3300008561 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052948 \| Ga0111060
Sample Name	Human stool microbial communities from NIH, USA - visit 2, subject 159713063 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	82126133
Sequencing Scaffolds	2
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0111060_116680	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
Ga0111060_118005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	548	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111060_116680	Ga0111060_1166802	F026592	CFLRTASPQGIAALAAQGGVATLTERSDETFSVMQFLSADRE*
Ga0111060_118005	Ga0111060_1180052	F029444	MEVSEQLTGFEPEDLMPWTVSNLQRPFREDFSLEKSGIIAEKGSQIFGRRFVGFDGPKKAAPFFNF*

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