NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008615

3300008615: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 675950834 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008615 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052975 | Ga0111231
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 675950834 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size101487259
Sequencing Scaffolds13
Novel Protein Genes17
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2791
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F040149Metagenome162N
F045567Metagenome152N
F049707Metagenome146N
F051213Metagenome144N
F053092Metagenome141N
F055792Metagenome138N
F067846Metagenome125Y
F089055Metagenome109Y
F090517Metagenome108N
F092232Metagenome107N
F095631Metagenome105N
F095632Metagenome105N
F098763Metagenome103N
F101358Metagenome102Y
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111231_1000001All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales237766Open in IMG/M
Ga0111231_1000048All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes44157Open in IMG/M
Ga0111231_1001237All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2795728Open in IMG/M
Ga0111231_1002467All Organisms → Viruses3592Open in IMG/M
Ga0111231_1002556All Organisms → cellular organisms → Bacteria3515Open in IMG/M
Ga0111231_1003542All Organisms → cellular organisms → Bacteria2822Open in IMG/M
Ga0111231_1003679All Organisms → Viruses → Predicted Viral2741Open in IMG/M
Ga0111231_1006188All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1965Open in IMG/M
Ga0111231_1006839Not Available1845Open in IMG/M
Ga0111231_1007321All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1767Open in IMG/M
Ga0111231_1021342All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas922Open in IMG/M
Ga0111231_1024258Not Available852Open in IMG/M
Ga0111231_1040599All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria608Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111231_1000001Ga0111231_1000001110F095631MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKATADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLDGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEEKIQNFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTDDNKLDISIIIA*
Ga0111231_1000001Ga0111231_100000114F092232MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVASFIISINKYATKKFTLDNIYNTDFWVCKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRSPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED*
Ga0111231_1000048Ga0111231_100004811F095632MRPLKKGTTMSFKETTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN*
Ga0111231_1000048Ga0111231_100004847F049707VVSEYKSPHNDGHDPYILIWEYGSEVQQAEFIERWAEYEPDTGWTMWYFRLEDGKVMKFRALEWEQKDDVNHLTTIYFTPRKEQQ*
Ga0111231_1001237Ga0111231_10012371F051213MKASKLLWAVVVALTFVLTSCDRVTDEPTIEGKVNKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0111231_1002467Ga0111231_10024673F105377VRDFDKLPLLTPEEAFERAWEEGGAAHPVFDRGYQVRNLNDWKAIETLLRQNDVPDITIASFGLKRFEEILDALAMLHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI*
Ga0111231_1002556Ga0111231_10025564F101358MTEKYSASHGAENQAPPPLPPQPEHLLTQPITTDGMPQERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEVLPTQSGNTYDHLGGDSACQLVGSVAAKASDTEVDNNLLVERVLGRVKQ*
Ga0111231_1003542Ga0111231_10035421F055792VEGQGVEIAGEALDSTSAVAHRILFLTTQLGESLLASFGTEDGVIAETMVTGALERDLAIDCALEEVRPVFVDESDDSTEAGTTWSRYPLETLQQEGYILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPHMTCLDESISLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS*
Ga0111231_1003542Ga0111231_10035422F040149VADEGAEELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPRLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0111231_1003679Ga0111231_10036793F053092MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGVLVAKELGITTHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELIAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0111231_1006188Ga0111231_10061882F090517MNRRIFSFSGLLLGLLFLASSCKKDTPRLRLSSVELRQTVWNGTLEYKSAKYGSYSVYLSFVSDSVVEVSTSTTTDLTAAHDIQAPCSYTMDDRILTLRARDEPYLNVSIDRNSWYLIRKEPSLLVFQANAGNPDREATLTLRKKL*
Ga0111231_1006839Ga0111231_10068392F067846MSIIEDWERQEFNKWDKQCSKEDDYNRAIEMEIESIKEDITNCDDDVICAFREKMLDYDEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYRLSAYSTTDRKR*
Ga0111231_1007321Ga0111231_10073212F045567MRQRDGHDTLTEELEGSITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDMIDTETCGLVVEVRATVDEDTLPTLGDDEGGGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKKRPRLTERECVCVVERVVR*
Ga0111231_1021342Ga0111231_10213422F098763MDRRASLRVLSPALYLATKLFKAVVRTTISYDPSDEVEGKGGMNAISTAVDE*
Ga0111231_1024258Ga0111231_10242581F022002MSSRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFDDLKILEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELERAYSAENENEI*
Ga0111231_1040599Ga0111231_10405992F089055LKVEKMNSMSECVTKTPEIEARKKEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAIDLCNKALGSYGKSLDRIKNSPIEAVWAIGASLQHLRDKYKTEESCR*
Ga0111231_1045607Ga0111231_10456071F022002GIHAGSNDVDYTVTGLNYARRPTQTVCMFFYKGHLRRIVFIFNDLDVLEQIESELEDKYGTMAEGVGTSKMKSKVVFDAFTRLLIVRGFKHEGHFGFKDAYITYSDDELDRARSAEKESEI*
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