NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008626

3300008626: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764487809 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008626 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052986 | Ga0111364
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 764487809 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size103880820
Sequencing Scaffolds8
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4162
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041827Metagenome159Y
F046432Metagenome151Y
F067846Metagenome125Y
F073671Metagenome120N
F080166Metagenome115N
F089057Metagenome109N
F092230Metagenome107N
F092232Metagenome107N
F095629Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111364_100202All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae43137Open in IMG/M
Ga0111364_100546All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA41622641Open in IMG/M
Ga0111364_101371All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA41612206Open in IMG/M
Ga0111364_101680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae10394Open in IMG/M
Ga0111364_104956All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae4024Open in IMG/M
Ga0111364_105191All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes3822Open in IMG/M
Ga0111364_106497All Organisms → Viruses → Predicted Viral2961Open in IMG/M
Ga0111364_111000All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1563Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111364_100202Ga0111364_10020250F067846MESIQAQWERKTFNDYDRQCSKEDDYNRAVEMEIESIKEDISNCDSDTLCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND*
Ga0111364_100202Ga0111364_10020255F073671MNKETEHELAELHEKERGLEKALELVREKIRELVNYTDKNKV*
Ga0111364_100546Ga0111364_1005469F080166VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPDNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGDRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMRS*
Ga0111364_101371Ga0111364_10137115F092232MNTQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKTLRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDIIKISDHDIDDPEYYTFAIANAHMKNPFYISAVKSFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPEAVAFDANLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*
Ga0111364_101680Ga0111364_1016805F092230MRQAHKRMVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEAQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV*
Ga0111364_104956Ga0111364_1049564F041827MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMTIDGPHREASMDFEYDTYGRIVKERRFDHKSDYGETNITYQYDSQGRLVSSHAISTEYEEYPGSGLPPKTNPLCSVERKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGRVVKSFDENNQIIETIEYHNTKNALRNIKGFPALVAEFYVREYTYELKWYNVIESAYDFRFIDNVKTRNYPSGNYTLYKYKDDKGNSYDGDYPTDIFIFDKSHNDPTLSDHLWYLNASRYYIKEE*
Ga0111364_105191Ga0111364_1051915F089057MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIISSNDKYSEVLGNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIINKDIDKLASLCTGYLAIIKDEVL
Ga0111364_106497Ga0111364_1064973F095629MEAKTMRELIICACLLGCFGVAQAAAPVDQPKEVKVVHNDDNVALHKKVYKLEQRIERLEKLLAEKEGK*
Ga0111364_111000Ga0111364_1110002F046432MWEMTENELSGIISKYQMTEGRYSLEEEGSFGESEFFWVFKNQLTNQKYLLVNTYSHHGVEAELEYYREEGFDNLEAIPRRIETLEIASYADDEISKYLFGMYSLFEIKS*
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