NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008708

3300008708: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763577454 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008708 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0053319 | Ga0115607
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 763577454 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size13595914
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036281Metagenome170N
F051214Metagenome144N
F077781Metagenome / Metatranscriptome117N
F081456Metagenome114N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0115607_103915All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan597Open in IMG/M
Ga0115607_104273All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes558Open in IMG/M
Ga0115607_104662All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes526Open in IMG/M
Ga0115607_104718All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes522Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0115607_103915Ga0115607_1039151F077781PPIAAPARPASAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPGAGALSVRTADSLFLGFPRPHPGTPGLGRFRPFLALQSLSETPSHARMPRVTVARPSPETLEISPLRAAT*
Ga0115607_104273Ga0115607_1042731F051214RIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0115607_104662Ga0115607_1046621F036281LIKVDEGPVDIYELRMQYLAKLKETDGVMLPKFIYRNKDLFVTEFKPTCDDQWIMYLTNADGLIAKMRIKNGDLMSNGSVLFLAEERKTYTAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREMGHWYTFRMSDDQKSKFTRHTITNEKGHQAYRRGSPD
Ga0115607_104718Ga0115607_1047181F081456PLVIQHYTPTWGIGFSRARKEHTMFEEPLIYYILISLIFLIVFGAISFATWLVWLTNVAFFVKLIITAIGALFAAFTVILYTISAE*

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