Basic Information | |
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IMG/M Taxon OID | 3300008708 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053319 | Ga0115607 |
Sample Name | Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763577454 reassembly |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 13595914 |
Sequencing Scaffolds | 4 |
Novel Protein Genes | 4 |
Associated Families | 4 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 3 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | National Institutes of Health, USA | |||||||
Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036281 | Metagenome | 170 | N |
F051214 | Metagenome | 144 | N |
F077781 | Metagenome / Metatranscriptome | 117 | N |
F081456 | Metagenome | 114 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0115607_103915 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan | 597 | Open in IMG/M |
Ga0115607_104273 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 558 | Open in IMG/M |
Ga0115607_104662 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 526 | Open in IMG/M |
Ga0115607_104718 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 522 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0115607_103915 | Ga0115607_1039151 | F077781 | PPIAAPARPASAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPGAGALSVRTADSLFLGFPRPHPGTPGLGRFRPFLALQSLSETPSHARMPRVTVARPSPETLEISPLRAAT* |
Ga0115607_104273 | Ga0115607_1042731 | F051214 | RIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA* |
Ga0115607_104662 | Ga0115607_1046621 | F036281 | LIKVDEGPVDIYELRMQYLAKLKETDGVMLPKFIYRNKDLFVTEFKPTCDDQWIMYLTNADGLIAKMRIKNGDLMSNGSVLFLAEERKTYTAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREMGHWYTFRMSDDQKSKFTRHTITNEKGHQAYRRGSPD |
Ga0115607_104718 | Ga0115607_1047181 | F081456 | PLVIQHYTPTWGIGFSRARKEHTMFEEPLIYYILISLIFLIVFGAISFATWLVWLTNVAFFVKLIITAIGALFAAFTVILYTISAE* |
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