Sample 3300008880

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300008880

3300008880: Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3059

Overview

Basic Information
IMG/M Taxon OID	3300008880 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117986 \| Gp0126487 \| Ga0103898
Sample Name	Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3059
Sequencing Status	Permanent Draft
Sequencing Center	Massachusetts Institute of Technology
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	6845012
Sequencing Scaffolds	2
Novel Protein Genes	3
Associated Families	3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Communities Of Surface Water Sampled In Lagrangian Time Series From North Pacific Subtropical Gyre
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Surface Ocean Water → Microbial Communities Of Surface Water Sampled In Lagrangian Time Series From North Pacific Subtropical Gyre

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → surface water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	North Pacific Ocean
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F001926	Metagenome / Metatranscriptome	616	Y
F101219	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0103898_100295	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	785	Open in IMG/M
Ga0103898_101109	Not Available	531	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103898_100295	Ga0103898_1002952	F001926	VRHEDIPDMSNPKTTKAVLEGDKLMKEVLNGGYNVHPVPPPNSETKERSARKYERKRTKIEKLFTLGYTTSGDP*
Ga0103898_101109	Ga0103898_1011091	F101219	ISLPLVFATFFFVWKKQALEVTPESFQEERTQPVDDQVVEPVAPSMAKVENTESEVAQLGSHEKPVEKIDNDIRIAPSQAPPVGNSKPRVLEILEDVKIAIKESVIKNAEGNQALDTRISLVETSMKHPLMILEEKGTKFGQTGEEVIKANAHVATHFMLQVVPGTNLLALEEKLS
Ga0103898_101268	Ga0103898_1012681	F000075	AALIATVAANRYENMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*

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