NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009483

3300009483: Microbial communities of aphids from Rhus glabra galls in Chiricahua Mtns, AZ, USA - Melaphis rhois NM090294 seqcov



Overview

Basic Information
IMG/M Taxon OID3300009483 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118459 | Gp0139334 | Ga0127651
Sample NameMicrobial communities of aphids from Rhus glabra galls in Chiricahua Mtns, AZ, USA - Melaphis rhois NM090294 seqcov
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Texas, Austin
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size250743935
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities Of Aphids From Plants In Several Locations Around Usa
TypeHost-Associated
TaxonomyHost-Associated → Insecta → Unclassified → Unclassified → Unclassified → Rhus Glabra → Host-Associated Microbial Communities Of Aphids From Plants In Several Locations Around Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal corpus

Location Information
LocationChiricahua Mtns, AZ, USA
CoordinatesLat. (o)31.934752Long. (o)-109.3828Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013193Metagenome273Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0127651_108962Not Available5935Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0127651_108962Ga0127651_1089624F013193MHQHRP*TLEAPKEVIAQEVAAIPPEMTRKVIDNYRETLDRCIENEGRHLSDVIFKNS*

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