NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300009513

3300009513: Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1Y



Overview

Basic Information
IMG/M Taxon OID3300009513 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0120400 | Gp0147181 | Ga0129285
Sample NameMicrobial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1Y
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Delaware
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size1027258273
Sequencing Scaffolds24
Novel Protein Genes24
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium1
Not Available7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2
All Organisms → cellular organisms → Archaea5
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium SEEP-SAG101

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Role In Biogeochemical Cycling In A Beach Aquifer System
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater → Microbial Role In Biogeochemical Cycling In A Beach Aquifer System

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → aquifer → groundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCape Shores, Lewes, Delaware, USA
CoordinatesLat. (o)38.7855Long. (o)-75.1045Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003507Metagenome / Metatranscriptome482Y
F003590Metagenome / Metatranscriptome478Y
F011939Metagenome / Metatranscriptome285Y
F018371Metagenome / Metatranscriptome235Y
F024951Metagenome203Y
F036294Metagenome / Metatranscriptome170Y
F038915Metagenome165Y
F040633Metagenome / Metatranscriptome161Y
F052275Metagenome / Metatranscriptome143Y
F059103Metagenome / Metatranscriptome134Y
F065253Metagenome / Metatranscriptome128Y
F068265Metagenome125Y
F072776Metagenome121N
F074333Metagenome119Y
F078730Metagenome / Metatranscriptome116Y
F085725Metagenome111Y
F087322Metagenome110Y
F093218Metagenome / Metatranscriptome106Y
F094578Metagenome / Metatranscriptome106Y
F096533Metagenome104Y
F099975Metagenome / Metatranscriptome103Y
F102416Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0129285_10004249All Organisms → cellular organisms → Bacteria → Proteobacteria6624Open in IMG/M
Ga0129285_10038749All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1866Open in IMG/M
Ga0129285_10071037All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium1372Open in IMG/M
Ga0129285_10084547Not Available1262Open in IMG/M
Ga0129285_10094687Not Available1196Open in IMG/M
Ga0129285_10111523Not Available1107Open in IMG/M
Ga0129285_10122795All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1059Open in IMG/M
Ga0129285_10178354All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon893Open in IMG/M
Ga0129285_10213540All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium824Open in IMG/M
Ga0129285_10244092All Organisms → cellular organisms → Bacteria → Proteobacteria777Open in IMG/M
Ga0129285_10253658All Organisms → cellular organisms → Archaea764Open in IMG/M
Ga0129285_10261875All Organisms → cellular organisms → Bacteria753Open in IMG/M
Ga0129285_10299904All Organisms → cellular organisms → Archaea709Open in IMG/M
Ga0129285_10306757All Organisms → cellular organisms → Archaea702Open in IMG/M
Ga0129285_10311314Not Available697Open in IMG/M
Ga0129285_10328522All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes680Open in IMG/M
Ga0129285_10384620All Organisms → cellular organisms → Archaea633Open in IMG/M
Ga0129285_10401282All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium621Open in IMG/M
Ga0129285_10545143Not Available539Open in IMG/M
Ga0129285_10549047Not Available537Open in IMG/M
Ga0129285_10568422Not Available528Open in IMG/M
Ga0129285_10588710All Organisms → cellular organisms → Archaea519Open in IMG/M
Ga0129285_10612943All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium SEEP-SAG10509Open in IMG/M
Ga0129285_10637123All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0129285_10004249Ga0129285_100042492F018371MEQNIVAPNRLTNMQEMEVYVNGPDGANRLYIYSGMAEVEICGALPHPRWSLELICFDIGRIHESADEIVKITALASFGGGRTDGVAGFAGWQIFGAAGEYDEDSKRVRMNIAAGARDTQAFLEQIAFQVHVLAKVKE*
Ga0129285_10038749Ga0129285_100387492F011939MPRLTLKLAEETLRKEVQKLDKRTQVVGVAQSKKKDAYRVTLLKDGRTSSADLKKDLLKQCLAQEGKGGGLKKALGKAVSHLSIKYR*
Ga0129285_10071037Ga0129285_100710371F003507VGGLEEVHADPRQSHFVLPEMLSQFRRRLSEELMPRLLQIQTTAALEAGLISPSHLVVDTFASEQGSQRVTDATTLYKAKKKS*
Ga0129285_10084547Ga0129285_100845471F102416MGELATFGDIIMGENDWGMISKNPPMYESAVDNAVIEVTDTENKVHKITFKKGGVLNLGREDKTMYLAWDDADTA*
Ga0129285_10094687Ga0129285_100946872F038915MPAISLKNVAAGTSNCLDGLKFQNLQGPALISIYASTAVAGGNIDFSVDTEDFLKAAEANIEASADVVDTDRDLILLREPVPAGKMFLSVNAQICNVLVMIDEV*
Ga0129285_10111523Ga0129285_101115231F036294WFSDEAIVGVKPVADEGAVTYLRGKVSERDRDVGAEGWNM*
Ga0129285_10122795Ga0129285_101227952F078730MEQNIIEPNRLTNMQEMEVHVNGPDGANRLYIYSGMAEVDICGGLPHPRWSLEVICFDVGRAYESADEIVKITALASFGGGRTDGVAGFAGWQIFGAAGEYDE
Ga0129285_10178354Ga0129285_101783542F102416MGELATNDEITMGENDWGMISKEPRMYETGVDNAVIEVTDTENKVHKITFKKGGVLKLGREGETLYLAWDDSDTV*
Ga0129285_10213540Ga0129285_102135402F059103MTVKDPPDLLLRLGPLDAPTAAWLLDFAGHLQQAIWRAYGDELEAHWAATEPHQPIYRPSTPPLSRKP*
Ga0129285_10244092Ga0129285_102440921F040633GVRRAKAAFLSGCKSHPAKLLQPEAIGAVMEVTKWLKPLV*
Ga0129285_10253658Ga0129285_102536582F074333MKIEIGDNMRIPTDGKFHPESGHFGKCVWISEDRKTVAIQCERSHKGKNMVFVVEINSEK
Ga0129285_10261875Ga0129285_102618752F093218RRAARSTIWWKKFKDSCKYLSASLAIILVKRKLGRRPHDWTLWFTLGRLYEVGYQWPQAIDALKNARKLDPDNEIIAQHLSHMKEAAHLRKRGKC*
Ga0129285_10299904Ga0129285_102999041F024951MRKVTVKLEMNVVMLVDEGVEISEVVNELDYTVNDTTTAADILDTEITGYEVVDSK*
Ga0129285_10306757Ga0129285_103067572F087322SVCLQALRFGLVLTDLFVFRITQAGTGEACLTFFIKRIFLGEDFRAAIKIQAR*
Ga0129285_10311314Ga0129285_103113141F085725MLLSAITIGLYLAFIGVRHKKRSPGLGMTHAGLALTATIILFVEIFNGPTVKLNNAAAFFLLLAIIGGGLVFLLHEKNRPPSMAAVVA
Ga0129285_10328522Ga0129285_103285223F065253MAAPFFHVEQRSAWIRTSTHTVVYDRDPDYPRFAKDPGGTIKRMLRIWLAELGSEGPYLRAYLGTVTFCFAGPSFRELCRLFHLATRAAKAAGQSAKAL
Ga0129285_10384620Ga0129285_103846201F072776MVVQDETIGGALMYIDCDTHYFPVKFLEGISDQYPDSPRVVRNGDEVKSVLPDGTLIKNQAPKGRWDLDTRVQQADFEGFDKHVLIPENRE
Ga0129285_10401282Ga0129285_104012822F068265MAKKKQPSAVPVEEGLFFPEDFLKLHKRHVIYIKKGVIIDLDKL*
Ga0129285_10545143Ga0129285_105451432F052275KSTYTCPTCGYTAKVWAEPDRAPIATVDTGHYKGCKSLVEVPIEFHCGGLIEDPDVVPSFLNRCPDCNSSSVVPWDAKHSCPKCGEHMTQEAN*
Ga0129285_10549047Ga0129285_105490471F096533MSETLEIMLSDLKDEAQKEILEFYGYETAEESNLGIGPGQTHLNY*
Ga0129285_10568422Ga0129285_105684222F096533MSEALNIMLEDLNSQTQQEVLEFYGYETAAEGNFDIMPLFVLETEDRKEQ*
Ga0129285_10588710Ga0129285_105887102F094578MVDDKKEKPKWPLQRLKGMYFAMHCWKCKKFELPMGEYKKKCEENIQKIINNSKIKEIRFREFNSIIKNSVFCRFEKRNFSNNCPIC
Ga0129285_10612943Ga0129285_106129432F099975EIKGLRGGTHWYVAQTIPQSDAEIAEKGHFWMETS*
Ga0129285_10637123Ga0129285_106371231F003590FNGSGKADGEVYISCVQGVAGQLPGPMRWKVKDSEVVEAEGGELAEECRQLFQNVPGSNRLVEIMFGYHPKASIQYGIADPMHWELISKMPWVGLGTDRKNPTFRHVDGSVMNGRLYIDDRIIVHEQGMLDRSFLHHPEVLEVASEYGDPYQLLAPVSHQAHGSGT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.