Sample 3300009590

Basic Information
IMG/M Taxon OID	3300009590 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0127787 \| Ga0105159
Sample Name	Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_replicate
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	185139994
Sequencing Scaffolds	35
Novel Protein Genes	35
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	17
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1
Not Available	9
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	2
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	1

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: California, Little Hot Creek
Coordinates	Lat. (^o)	37.6906	Long. (^o)	-118.8442	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004454	Metagenome / Metatranscriptome	437	Y
F006925	Metagenome	362	Y
F008219	Metagenome	337	Y
F013170	Metagenome	273	Y
F019254	Metagenome	231	Y
F020112	Metagenome	226	Y
F025877	Metagenome	200	Y
F038537	Metagenome	165	Y
F051554	Metagenome	144	Y
F064214	Metagenome	129	Y
F074155	Metagenome	120	Y
F080880	Metagenome / Metatranscriptome	114	Y
F084856	Metagenome / Metatranscriptome	112	N
F089858	Metagenome	108	Y
F091324	Metagenome / Metatranscriptome	107	Y
F103293	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105159_1000362	All Organisms → cellular organisms → Bacteria	12790	Open in IMG/M
Ga0105159_1001206	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	7207	Open in IMG/M
Ga0105159_1002619	All Organisms → cellular organisms → Bacteria	4795	Open in IMG/M
Ga0105159_1002880	All Organisms → cellular organisms → Archaea	4557	Open in IMG/M
Ga0105159_1008749	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2356	Open in IMG/M
Ga0105159_1011123	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2042	Open in IMG/M
Ga0105159_1012831	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1873	Open in IMG/M
Ga0105159_1013781	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1787	Open in IMG/M
Ga0105159_1015215	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1679	Open in IMG/M
Ga0105159_1021802	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1326	Open in IMG/M
Ga0105159_1025974	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1182	Open in IMG/M
Ga0105159_1027270	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1143	Open in IMG/M
Ga0105159_1031840	All Organisms → cellular organisms → Archaea	1027	Open in IMG/M
Ga0105159_1033939	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	984	Open in IMG/M
Ga0105159_1034450	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	974	Open in IMG/M
Ga0105159_1035352	Not Available	958	Open in IMG/M
Ga0105159_1036869	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	931	Open in IMG/M
Ga0105159_1037016	Not Available	928	Open in IMG/M
Ga0105159_1037517	Not Available	919	Open in IMG/M
Ga0105159_1038429	All Organisms → cellular organisms → Archaea	905	Open in IMG/M
Ga0105159_1041217	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	862	Open in IMG/M
Ga0105159_1044463	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	818	Open in IMG/M
Ga0105159_1044612	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	816	Open in IMG/M
Ga0105159_1046227	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	797	Open in IMG/M
Ga0105159_1048952	Not Available	767	Open in IMG/M
Ga0105159_1049334	Not Available	762	Open in IMG/M
Ga0105159_1051295	Not Available	743	Open in IMG/M
Ga0105159_1052541	Not Available	731	Open in IMG/M
Ga0105159_1054165	Not Available	715	Open in IMG/M
Ga0105159_1055606	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	702	Open in IMG/M
Ga0105159_1062488	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	649	Open in IMG/M
Ga0105159_1067776	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	613	Open in IMG/M
Ga0105159_1070043	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	600	Open in IMG/M
Ga0105159_1077983	Not Available	560	Open in IMG/M
Ga0105159_1085558	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	526	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105159_1000362	Ga0105159_10003622	F074155	MAANLLSFDFIRGRLSPEQLEDLAVSLGLCLECGGNLVSRDGEIVCSSCGFVWAVENTAYYVPFPEYESADGGERNHFEGHWQPGSTLAFLKGLGDPALANSRGKALMRVLAKSPNGATDLGLRARQVKTLVEWEDPPQLRRVLSRISLLLTQMGQRENWLLADYAGKLARKIVAFKLLTREPISYKLGDAIIAHTIKKFSLKASPPNLKVENEDLQLIRQLENITQKPKHPKPAYQATHSINSN*
Ga0105159_1001206	Ga0105159_10012065	F025877	MPGIEETENTFRYRVQEPEKFDKFRVKPITEGVKITVGRVKGTNRWEVQNYIFDKKRFKDRESVKKWLEKHLKSEIQTLLDFKAWNEWRKRFLRAYLQISNIA*
Ga0105159_1002619	Ga0105159_10026193	F019254	MPNEKIHEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSFLCQRPSVSEGRSKKKKVENLPLF*
Ga0105159_1002880	Ga0105159_10028802	F038537	MIVRVYFWKDLAPLLKRFCREHNIALNRVINLAVQNFIGTSNVEELKLCAKLNQLLREEAELRRVCNAMLRSGSYLPGYVQRVLREPGRSLTYLPDPQRPLKALNPREERVFRKIAARREQIAREIAEIQEQLLRDVKPFRLKPDLRLSRSRARGKISLKEVKKPNGETA*
Ga0105159_1008749	Ga0105159_10087492	F013170	MSVHLHTTITRKANDILEELAKTYGTKSRVLEKALETLLRVDKVGSCDDCTIKAKVNEQTKLREALDLASISRRNLDSLLEIAMGNKTIEDFIKEQKAEAKNTIEILKSSISWKAPSNFKEFLIVLEEIRNLTNMYEIPSYSEIDNIAILRPKVFKRLPILVAFQVATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRRKEFGEFLEQQIEKELANVTPGLFKSTLTLVGPAFMSWAEKHLEEPITDLGNLLEDARIVLGLEEFPKEPKDFVKALLSAFVKMNWFKQAKVLIERDENILELVFQAVSAPITRMSVAALSIMLATRGWKTLNYSTEHTTVNMTIQYVGAEDQSLLDQLAELSLFQVIGKQFLDVIPVPRDLFNSFASKVYESDRRKFEEIYRATGTRISNAIRMLARNDPEKIRRLAKNFILKNIDATQPDAEVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEITTTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPEDYPWTIREVGERIIDMYRELGIEVEIEYFEGGFTLKYKSCPY
Ga0105159_1011123	Ga0105159_10111235	F020112	MVSKAFRKCVELVEEMLSRGFRLQISQTEVERLIKIGIGADKRTVQKYVRMLTEDLGFLRTAAKNPFGTAIYSIDVPAIEQFVSQHLKEKLKQLRLSDIRLKQDEDLKEVNVQRG*
Ga0105159_1012831	Ga0105159_10128311	F074155	MACLVGLDFIRSRLTGELLEVLALSLELCLSCGGKLVSRDGEVVCSCCGLVWSVENSAFYVPFPEHESFEGGGAHFEGHWQPGNTLAFLKGLGDPALANSRGKGKALMRILAKSPNGAADLGLRARQVKSMVEWEDPPQLRRVLSRVSLLLAQIGQRENWLLADYVGNLARKIVAFKLLTGHMLKANVGDAVAAYATEKFGLKVKPQGLEADADDLELVRMLDKLKDKRNPHAKKVKLLPILEKYNPT*
Ga0105159_1013781	Ga0105159_10137813	F064214	MKTLSDGATMFAKGDLKALVKSAEELAGALRDTIDVLAEHERRIKLIEEKLGFAPDLETHALKKAVKEARMV*
Ga0105159_1015215	Ga0105159_10152155	F064214	MSGKSDLKLLVKSAEDLAYALRDTLDVLADHEHRIKRLEEKLGFLADVELRVVEKAVAGGCGE*
Ga0105159_1021802	Ga0105159_10218021	F074155	EHESSDGGEGSRFEGHWQPGNTLAFLKGLGDPALANSRGKGKALMRVLAKSPNGAEDLGLRARQVKTLVEWEDPPQLRRVLSRISLLLTQMGQRENWLLADFTGKLARKIVAFKLLTGQTVWANVGDAVVAYAVEKFGFKVKPQGLEADADDLELVRMLDKLKERRNPHAKKVELPPILEKI*
Ga0105159_1025974	Ga0105159_10259744	F064214	MKSDLKVLVKSAEDLACALRDTLDVLADHERRIKLIEEKLGFAPDLETRASKRAVKEARMV*
Ga0105159_1027270	Ga0105159_10272702	F080880	MSIHLHTTITKKANDILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKINEQTKLREALDLTSISRRNLDSLLEIALGNKTIEDFVKEQKADAKNTIEILKSSISWKPPSNFKEFLMVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPVIVAFHVATILEGIGVYFDIRVMGEDIAVKMVRPEIYPLRRKEFGEFLEQQIEKELANVTPGLFKNTLMLVGPAFMNWAEKHLEEPITDLGNLLEDARIALGVDEFPKEPKDFVKALLSAFVKMNWFKQA
Ga0105159_1031840	Ga0105159_10318402	F004454	LSRDFRRTVIEVREDLHREIRRLALLNDLRIYQLANAIIEDYLKDGERVKALIKRLRLVPP*
Ga0105159_1033939	Ga0105159_10339392	F089858	MEWVEFLVRLRFHVDGFYPERLTREYVEGEVRKRLSAPGLEEEGLMEIIVSEKGVDGLLNIPVKRGELWVKELGDGRFAINLDGPDDPGITCAEVHVVHEDLTEEVIRAKGVKYVILGDIPGMGKARLVRMRRVRKIEEGEGE*
Ga0105159_1034450	Ga0105159_10344501	F038537	MIVRVYFWKGLLPLLRRFCRERGLPFNRVVNLAVQSFLGGCDVMELRLQARLDCLLREEVELRRVCNAMLRSGSYLPGYVRWVLREPGRSLGHLPDAQRPLKALNPREERVFRRIVARREQIAREIAEIEELLLRDVKPFRLKPEPKRSRSRARDKYKAPEPGGGACLEMGKLPRMGKPPFLKPHHV
Ga0105159_1035352	Ga0105159_10353521	F025877	MPGLDETENTFRYRVQDPDKFDKFRVKTITKGVKITLGRVKGTNRWEIQNYIFDKTRFKDRESVRKWLEKHLKSEAQLLLDFRAF
Ga0105159_1036869	Ga0105159_10368692	F103293	MALDLERLSWLEPPYEIYEFKPGEPATFHVTTYKIGKIRIVPRWPGAPPEKLVIAIRLYVDPATKPAYPPYYDITPSRLVHQLSNLLVQGIPPGMALQITRDIPGPKAHFSVEWIPK*
Ga0105159_1037016	Ga0105159_10370162	F025877	MPGLEEGVTVWRYRVQDPDRFDKFRVKDLGNGVKITLGRVKGTDRWEIQNYMFDKTRFKDRESVRKWLEQHLKSEAQLLLDFRAFNEMRRRFLRAFIEIARID*
Ga0105159_1037517	Ga0105159_10375172	F064214	MSLKSDLRILVKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVEMRVVGRAVAGGRGE*
Ga0105159_1038429	Ga0105159_10384293	F064214	MSHKGDLKLLIKSAEDLAYALRDTLDVIADHERRIKRLEEKLGFLVDVESRVVEKAVAGGRGE*
Ga0105159_1041217	Ga0105159_10412172	F006925	VEVSVLENFGREAELRKKWMRMWERLGVRILNMPKWMQEIVLEDINTAIRNRIAIMEMIQNAKRNR*
Ga0105159_1044463	Ga0105159_10444631	F074155	FIRGRLSPEQLADLAVSLGVCLECGGNLVSKDGEIVCSSCGLVWAVENTADYVPFPEYESADGGEGSRFEGHWQPGNTLAFLKGLGDPALANGKGRALMRVLAKSPNGATDLGLRARQIKTLIKWEDPPQLRKVLSRISLLLTQMGQRENWLLSNYTGNLARKIVAFKLLTKQPISYKLGDAIIAHTIEKFGLKTAASNLKAETEDLQLIQQIENMTQKPKLPKSPDQANSPINSN*
Ga0105159_1044612	Ga0105159_10446121	F074155	VAANLLSFDFIRGRLSPEQLEEFAVSLGVCLECGGNLVVRDYELVCSQCGVVWSVENTADCVPFPEYEEAVNVEGSHFEGHWQPCNTLAFLKGLGDPALANGRGKALMHVLAKSPNGAADLGLRARQVKTLVEWEDPPQLRRVLSRISLLLAQMGQRENWLLANYTGNLARKIVAFKLLTKQPVSYKIGDAIIAHTIEKFSLKTDSPNLKVETEDLQLIRQLENATQKPKRPKPAYQESPSVNSN
Ga0105159_1046227	Ga0105159_10462271	F074155	LVWSVENSTDYVPFPEHESSDGGEGSRFEGHWQPGNTLAFLKGLGDPTLANSRGKGKALMRVLAKSPNGAVDLGLRARYVKTLVEWEDPPQLRKVLSRISLLLTQMGQRENWLLADYTGNLARKIVAFKLLTCQTVNANVGDAVVAYAIEKFGLKVKPPDLKADADDLELARTLDKVKDKWNPQAKKRIATPSLT*
Ga0105159_1048952	Ga0105159_10489521	F084856	MERDGAVSGISELMIVTHLYTRSHLNALSEALPEWIRLLPNAQILVGYYQNRFQASDFRSLINENPQVQLIPVQNSSYGAAYDSLLDQTTGKPILILAPYAIPKEWFVGATGSLFQWFESYAIIGRYRQPRILVADAILMPLIAPVIVELGRLQMDCIAVREDVPRAVGYHEWRFGTVLVRARPGAF
Ga0105159_1049334	Ga0105159_10493341	F025877	MPGLEEGVTVWRYRVQDPDKFDKLRVKELGNGVKITLGRVKGTDRWEIQNYMFDKTRFKDRESVRKWLEKHLKSEAQLLLDFRAFNEMRRRFLRAFIEIARID
Ga0105159_1051295	Ga0105159_10512951	F020112	MVSKAFRKCVELVEEMLSKGFKLQISQTEVERLIKIGIGADKRTVQKYMKMLTEDLGFLKTAAKNPFGTVVYSIDIPAIEQFVSQRLKEKLRQMRLSDIRLKQDEDLKEVNTQRG*
Ga0105159_1052541	Ga0105159_10525411	F020112	GFRLQISQTEVERLIKIGIGADKRTVQKYMRMLTEDLGFLKTAAKNPFGTVVYSINVPAIEQFVSQHLKEKPKQMRLSDIRLKQGEEVKGVNI*
Ga0105159_1054165	Ga0105159_10541652	F008219	LAVEAKNPQEAKNIADYILNLPIQDQKIENAIEIMRYEEVVQIKNPRA*
Ga0105159_1055606	Ga0105159_10556061	F091324	MSIHLHTTITKKANDILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKINEQIKLREALDLTSISRRNLDSLLEIALGNKTIEDFVKEQKADAKNTIEILKSSISWKSPSNFKEFLMVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPVIVAFHVATILEGIGVYFDIRVMGEDIAVKMVRPEIY
Ga0105159_1062488	Ga0105159_10624881	F038537	VYFWRGLEPLVRRFLSESGLPFNRFVNLAVQSFLGCCSVEELRLKAKLMGLLREEVELRKIQNCMLRSGSYLPAYVQRTLREPGRPVSLVRDGQVPLKALNPKEERVFRKIAARREQIAREIAELSEQLLR
Ga0105159_1067776	Ga0105159_10677761	F091324	TMSIHLHTTITKKANDILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKINEQTKLREALDLTSISRRNLDSLLEIALGNKTIEDFVKEQKADAKNTIEILKSSISWKPPSNFKEFLMVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPVIVAFHVATILEGIGVYFDIRVMGEDIAVKMVRPEIYPLRRKEF
Ga0105159_1070043	Ga0105159_10700431	F051554	MQLRYYVPFKAVQPSTTEQAQYPIKEQLIVIEGVAIDTSVNKNKWQVPLEDLDYIVETLKGAQLRVDHAESALMIVGKVVDSWRDGDRVLFRAEVGDERLIDKIIRGYVDHVSIQVDSDEVECSKCKRSTRKEGRLVHLCPGAWEVVRKPKVRELSIVASPAYENTAFQPVGFYAAMNEAQWGAVIETLC
Ga0105159_1077983	Ga0105159_10779832	F064214	MSLKSDLRVLVKSAEDLAYALRDTLDVLADHERRIKQLEEKLGFLADVEMRVVGRAVAGGRGE*
Ga0105159_1085558	Ga0105159_10855581	F103293	IFEFKPAEPAVFHVTAYKIGKIRIVPRWPGAPPEKLVTAIRLFVDPATKPAYPHYYDITPSRLVHQLSNLLTQGIPPGMALRITRDTPGPKAHFTVEWTPK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009590: Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_replicate

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences