Sample 3300009842

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300009842

3300009842: Bacterial communities in Amundsen Sea Polynya. Combined Assembly of Gp0149108, Gp0149160, Gp0151052

Overview

Basic Information
IMG/M Taxon OID	3300009842 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0120457 \| Gp0149108 \| Ga0131972
Sample Name	Bacterial communities in Amundsen Sea Polynya. Combined Assembly of Gp0149108, Gp0149160, Gp0151052
Sequencing Status	Permanent Draft
Sequencing Center	Macrogen Inc
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	36616378
Sequencing Scaffolds	21
Novel Protein Genes	21
Associated Families	19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	4
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Metagenomic Analysis Of Heterotrophic Bacteria Associated With Phytoplankton Bloom In Amundsen Sea Polynya
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Metagenomic Analysis Of Heterotrophic Bacteria Associated With Phytoplankton Bloom In Amundsen Sea Polynya

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	Polynya in Amundsen Sea
Coordinates	Lat. (^o)	-73.3	Long. (^o)	-113.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004613	Metagenome / Metatranscriptome	431	Y
F006001	Metagenome / Metatranscriptome	384	Y
F006403	Metagenome / Metatranscriptome	374	Y
F009761	Metagenome / Metatranscriptome	313	Y
F013024	Metagenome / Metatranscriptome	275	N
F016210	Metagenome / Metatranscriptome	249	Y
F019853	Metagenome	227	Y
F022753	Metagenome / Metatranscriptome	213	N
F023136	Metagenome / Metatranscriptome	211	Y
F043199	Metagenome / Metatranscriptome	156	Y
F047171	Metagenome	150	Y
F047312	Metagenome / Metatranscriptome	150	Y
F059054	Metagenome / Metatranscriptome	134	Y
F063090	Metagenome / Metatranscriptome	130	N
F073763	Metagenome	120	Y
F088363	Metagenome / Metatranscriptome	109	N
F094415	Metagenome / Metatranscriptome	106	N
F101886	Metagenome / Metatranscriptome	102	N
F102429	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0131972_10030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	64034	Open in IMG/M
Ga0131972_10062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	31476	Open in IMG/M
Ga0131972_10098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	10776	Open in IMG/M
Ga0131972_10103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	18072	Open in IMG/M
Ga0131972_10186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	9970	Open in IMG/M
Ga0131972_10636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	5086	Open in IMG/M
Ga0131972_10796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1967	Open in IMG/M
Ga0131972_11021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	6261	Open in IMG/M
Ga0131972_11154	Not Available	1328	Open in IMG/M
Ga0131972_11177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5727	Open in IMG/M
Ga0131972_11283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1212	Open in IMG/M
Ga0131972_11524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1065	Open in IMG/M
Ga0131972_11540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	5375	Open in IMG/M
Ga0131972_11560	Not Available	1047	Open in IMG/M
Ga0131972_11764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	5363	Open in IMG/M
Ga0131972_11832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	5378	Open in IMG/M
Ga0131972_12400	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	124345	Open in IMG/M
Ga0131972_12480	All Organisms → cellular organisms → Bacteria	9091	Open in IMG/M
Ga0131972_12746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	160728	Open in IMG/M
Ga0131972_13029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	62086	Open in IMG/M
Ga0131972_13654	All Organisms → cellular organisms → Bacteria → Proteobacteria	34794	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0131972_10030	Ga0131972_100306	F006001	MKFFLPIIVLIFSLSGCAKHVGIHNKDDSNLFTSSFETITGGSISDHILFGESSFELINIAKLRCKKISTKHKVKNFRRTFLGTIITDQMSIYEYDCEEDE*
Ga0131972_10062	Ga0131972_100624	F102429	XFKSNFSYFLSGISSVKYSTGYVMFLNFLVKKEFKNFFLATIPYLLGWFVYFMYTNSDPIINFFEPLKLSFMSNYRRDADIYSLLQIYFLGDKGSILKYISIAFIFLLNLLILIRINRQSSNFLKMSLVLICPLIFFPHSNYDYVLLFPLACYSLLNFDNYLNKINFFFVIYVFYLSRIVKHFLDIDWLYQPTLMLLIIVLIIVNTRTERKID*
Ga0131972_10098	Ga0131972_100981	F059054	LTKEVNKATYFPVFEFLSFENNKNKAPIVGRRIKDDKIGKFIILKLKMLIMQKDQLIS*
Ga0131972_10103	Ga0131972_101031	F022753	LKIVCKKKVSNIDWCEAAIKNFFPLIIFSLPLMIILVDKNIFKHKDVQKPIIFPPNKTIFFGSKIAGKKIREIKIIPEKKNNENKKFLIILIKN*
Ga0131972_10186	Ga0131972_101862	F019853	MIFSIDKDLALSDQDYKREKRIIKRLNITRLPFKITEENFCSRYIEMLKDMKPLFKYKSGEYAMKWCLSTDKKMRIFLLIFEANELGKAIYKENISTQLPEYSYKTIAQIVDQGIEKGFFIKLNARAKKTVDSKIRNIRPSEDLVVEFINWNIDIIATTASFQKKYN*
Ga0131972_10636	Ga0131972_106363	F006403	DIERKAIIKKAKKTIPNDLKLDFRFKTCFVEMINPANIQN*
Ga0131972_10796	Ga0131972_107962	F043199	MNTKNFKLSREDSQREQRIVSKLKIKKLPFKITVDNFCTRYREMFLDLKPLFKYQPGEYAMKWCFATEKRMRVFLIIFEANELGKEIYKESVSNQLPEYSYKTIAQIIDQGIDKKFFMKLPPRNIETKDSKIRNIRPSEELVVEFINWNIELISNISQFQKKYIN*
Ga0131972_11021	Ga0131972_110214	F047171	KALVLMERRSLKAEVIDLKASPSKNIVKKKLKFKTF*
Ga0131972_11154	Ga0131972_111541	F009761	RQIKSINILKDPASIGGKDVFRASLLIGYELPKINIINKTKR*
Ga0131972_11177	Ga0131972_111772	F047312	MSKPINLLKLSWIIFSVVSVGFLISFGVTSYQSRVVDEPNWMLCEADKGLKKPQYIKFHNTKKVIYNIYQQRWVEDMASMDVINSKGKEARPTIEIHEDKTRFTKTIYKRKQFLIFVSDKYYVFYKEIDDNFFWSSEVSKATAQHIIIKRDDLTMLDYKNEWVKAXXXXXXXX
Ga0131972_11283	Ga0131972_112831	F073763	NKTTATGIKNLKLWSKVNEIATQYKLNKKYPNPKHHPYQKKDLLLDIFSFLLKIKIKNKEKVIKLIIK*
Ga0131972_11524	Ga0131972_115241	F023136	LLIGKAFILLITKDIERKAIIKKAKKTIPNDLKLDFKFKTCFVEIIKLANIQNWVKNIIGIIKSGV
Ga0131972_11540	Ga0131972_115402	F004613	MVSDVTKKLNLSTEDLKRQKNIISKLNLAKLPFDISPDRMCALNLEMARHSSAVLKYQEDKSGIKWIFSSIKKYKVFLIIFESNELGEEIYKEKISSKLPEYSYKTVAQIVDDGVKKNFFIKLNARAKTTKDLKIRNVRPSEEVIIEFINWKIDLLASLMKFKKDLIN*
Ga0131972_11560	Ga0131972_115602	F016210	CEAGTGLKKPQYIKFHNTKKVIYNIYQQRWVEDMASMDVIKSKSKEAKPTIEIHEDKTRFTKTIYKRKQFLIYVSDKYYVFYKEINDNFFWSSEVSKVAAQHIIIKRDDFTILDYKNEWVKALQRNKKYTDVVIDNLFEEANGNIKSYEDILFSNGKTLKTQRSLDVFQCKEVAAVTAKI
Ga0131972_11764	Ga0131972_117643	F006403	LLITKDIERKAIIKKAKKTIPNDLKLDFKFKTCFVEIIKLXXXXX
Ga0131972_11832	Ga0131972_118323	F006403	LLIGRAFILLITKDIERKAIIKKAKKTIPNDLKLDFRFKTCFVEMIXXXXXXXX
Ga0131972_12400	Ga0131972_1240023	F088363	MKKLIYLFLTVLIVACSSDDDSSNDNNCPGQDALLAQYEDAASAFANSPSSTTCQEFISSLELFIQCGEGFTPSELEQFQQIVDTLDCSIY*
Ga0131972_12480	Ga0131972_124805	F094415	LGGNIGLFKDKNMIYTKNEMLNDLNASFTKGKIYSHSELRSFLESNKLFSVKNVAAYTYNRWNRGMIDIFPVLEWINRGTYKFLGTDFEYNGIIIHHPQGGIPYKIGHWENGKLFFFGRFDSFADWCNSTDDGIKVADLNSKIVFESSDGKITQKKILTDSRDDDVTFEKGYSLTLFDSTLGKLLRFKTEGDTFDFGNFSYIIKQIN*
Ga0131972_12746	Ga0131972_1274661	F063090	MIKLMTLVMALSMPLTALATDAIDKKLALSCTESLFLKGLDGVLKGYPGIAYPPTWQQGTGPYTYESRYDVSQTKRGKNELCAKYYGFVRPSQVSGNGKQANCKTNITGIKVILKSKAELALKDHQPFVCYFKDGSDITRDSYNFHSAWTAELLRP*
Ga0131972_13029	Ga0131972_1302914	F101886	MLKKIVTIGFCLFNVALFSQIGIEVAAVTPEQAMLEGMTQRIYASISHIDYIMAILWGVILFTALTAKKEYFLRAAWLYLGFYLCDIHFGHYMAMETNNTTWTISALMLVVIQCLFFYWSEKQIDAESFSS*
Ga0131972_13654	Ga0131972_1365415	F013024	MEKPATKFIATKLFWLGVIGTYILAGVLLNRLETNAGYEELRFTSLIPTLFYFFILFLSYRSFKTQAVRTTILQFVTQMLLLLPLMAMYMAVILFTTKFSS*

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