Sample 3300009862

Basic Information
IMG/M Taxon OID	3300009862 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116874 \| Gp0151139 \| Ga0132188
Sample Name	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, 3m depth; RNA IDBA-UD
Sequencing Status	Permanent Draft
Sequencing Center	Marine Biological Laboratory
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, 3m depth; RNA IDBA-UD

Sequencing Status

Permanent Draft

Sequencing Center

Marine Biological Laboratory

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	12964403
Sequencing Scaffolds	19
Novel Protein Genes	24
Associated Families	22

Dataset Contents

Total Genome Size

12964403

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	1
Not Available	7
All Organisms → cellular organisms → Eukaryota → Sar	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium

Not Available

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum

Ecosystem Assignment (GOLD)
Name	Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Ecosystem Assignment (GOLD)

Name

Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → meromictic pond → pond water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater biome → meromictic pond → pond water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.548517	Long. (^o)	-70.622961	Alt. (m)	N/A	Depth (m)	3
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Falmouth, Massachusetts

Coordinates

Lat. (^o)

41.548517

Long. (^o)

-70.622961

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000040	Metagenome / Metatranscriptome	3998	Y
F000077	Metagenome / Metatranscriptome	2584	Y
F000103	Metatranscriptome	2242	Y
F000267	Metagenome / Metatranscriptome	1412	Y
F000282	Metagenome / Metatranscriptome	1381	Y
F001174	Metatranscriptome	756	Y
F002083	Metatranscriptome	595	Y
F002598	Metagenome / Metatranscriptome	544	Y
F002825	Metagenome / Metatranscriptome	527	Y
F003518	Metatranscriptome	481	Y
F003765	Metatranscriptome	469	Y
F004250	Metatranscriptome	446	Y
F005258	Metatranscriptome	406	Y
F005469	Metatranscriptome	399	Y
F008173	Metatranscriptome	337	Y
F011763	Metagenome / Metatranscriptome	287	Y
F012720	Metagenome / Metatranscriptome	278	Y
F025263	Metagenome / Metatranscriptome	202	Y
F085396	Metagenome / Metatranscriptome	111	Y
F091921	Metagenome / Metatranscriptome	107	Y
F092154	Metatranscriptome	107	Y
F104104	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0132188_100049	All Organisms → cellular organisms → Bacteria	2122	Open in IMG/M
Ga0132188_100642	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1054	Open in IMG/M
Ga0132188_101733	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	762	Open in IMG/M
Ga0132188_101914	Not Available	740	Open in IMG/M
Ga0132188_102672	Not Available	662	Open in IMG/M
Ga0132188_103054	All Organisms → cellular organisms → Eukaryota → Sar	635	Open in IMG/M
Ga0132188_103160	Not Available	628	Open in IMG/M
Ga0132188_103261	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	621	Open in IMG/M
Ga0132188_103440	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	611	Open in IMG/M
Ga0132188_103618	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	601	Open in IMG/M
Ga0132188_104201	Not Available	572	Open in IMG/M
Ga0132188_104317	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	568	Open in IMG/M
Ga0132188_104634	Not Available	556	Open in IMG/M
Ga0132188_104767	Not Available	551	Open in IMG/M
Ga0132188_104905	All Organisms → cellular organisms → Eukaryota → Sar	546	Open in IMG/M
Ga0132188_105172	All Organisms → cellular organisms → Eukaryota → Sar	536	Open in IMG/M
Ga0132188_105843	All Organisms → cellular organisms → Eukaryota → Sar	514	Open in IMG/M
Ga0132188_105922	All Organisms → cellular organisms → Eukaryota → Sar	513	Open in IMG/M
Ga0132188_106086	Not Available	509	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0132188_100049	Ga0132188_1000492	F025263	MAINSNQLQVAKIYPGNYTNVLRYWHEEKSVVFNNENGTSETLTNQPIGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGLNGSNQAFSSANVIIPSPDFHKDIRSDITDGIKVPAGAYVYRASLRVDGGDVISSGVGGGSATPQLTLVPAMNQGLRSDGTVVSGQFGVSVTGSSSRIENGSNASVNIINSNNLSALAAETTWKLFATRNLGGVVASGLTLASGTFDPRAGVGSLKGKDKALAVCEVCWIVPDSAPKRD
Ga0132188_100642	Ga0132188_1006421	F002598	LIMATKLYTIENLLVGKNYVSRNRHFEGEIVSAEKREGIWYGENTEAYLIGVNAKNSIRTKYATIAVKIN*
Ga0132188_101151	Ga0132188_1011511	F000103	MLMLFLLSGSASAAVSDSESKVTPVQKVIQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEVLKADIQKYTADAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFVQVAALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAFDMLMQDLTAQIAQATQDRDEKAETKAKKLQAKADAEGDLKD
Ga0132188_101430	Ga0132188_1014301	F000103	LGLASSTNVAIESKVTPVQKVIQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEILKADIQKYTADAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFVQVSALKDLHLIPAEAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTSLEKEEMNSKHAYDMLMQDLNAQIAQATQDRDEKAETKAKKLQAKADAEGDLKDTT
Ga0132188_101519	Ga0132188_1015191	F092154	GEVASNETFKYLEIPEHSDRTILNILQDQVAPVLVKGYRPGEGIDPDRYPTPRIVESVTEISETLMKEVPAETAYTGFARGKVSYEDYIKELRGQLANQGGGWVTVAPRDTAQQGNDSESASISMISRVNAEIWAQKAGCVGYETGGAQYQAGLIRGFNPATIMCLGLPYNMPAHSLQRSQYVNGLTELPSSTRQALFDSTADLVASHYRPGVGVGGLWVPWQPYNFHAGNFYDDASKYSPQDETTAELLKAKCIPMPNWVFS
Ga0132188_101733	Ga0132188_1017331	F003765	FTKELEEATTAEEATIKAYEELMAAKQQEVDALTRATEEKMVRLGKVQVEIVEMKEDLDDTGKGLIEDKKFLADLKKNCATKAAEHAENMKMRSQELLALADTIKVLNDDDALELFKKTLPSSSSFMQLEVTAAQQRQQALATIRAAQHGHPELSFIALALQGKKVDFGKIISMIDEMVVVLTKEQQSDNDKKEYCETQLDLADDKKRSLERSVSLLEKAIAKEKEANQMLSDEIKSLEDGIVALDKSVAEATE
Ga0132188_101914	Ga0132188_1019141	F008173	DDLGTLTGGMAKEMHANILEVYPTWPETQQFLREVHTSVAPKRDYFYYNDVETVIAEIGERYGRFQDIECRQLKDWLVEVEDTSVGGAGRVRMADFYGKALKDGKWQFSETVDYLRQLGALDEADSSNPRVIIPNYISGPSNCVASSAYYSVCCLDECESILGQIEQSIAAPEALPSAIINLVSMIPSATMPSNRSLSPWLHHRLEEVAKHHGGRVPLHGRLFAQWLHYAYPRECQFPHISGTISP
Ga0132188_102672	Ga0132188_1026721	F008173	QQFLREVHTSVAPKRDYFYYNDVETVIAEIGERYGRFQDIECRQLKDWLVEVEDTGVGGAGRVRIADFYGKALNDGKWQFSETVDYLRQLGALDESDSANPRVIIPNYISGPSNCVASSAYYSVCCIDECESILGQIEQSIAAPEASPSAITQFVSMIPSATMPSNRSLSPWLHQRLEEVAKHHGGLVPLHGRLFAQWLHYAYPRECQFPHISGTINPQR
Ga0132188_103054	Ga0132188_1030541	F003518	ATLIEEIKDAEKRIKEATAESDKALKEYEVNDADLKAALYALTEAIKVLKTSQSPSMAQLQTIGKTVKQAALIADVLGIGGKDVEKAAAFFLQQGDGDVPVEMEDYKFHSTGIINTLEKLLDSFRAEEENLDADEKRRVQEFTMFMQDRTDFIKAQTLSLKEAKASKEQKIEDIATASQELTTTNADLLSDMEYLDELNTVCHDKAKTWDQ
Ga0132188_103064	Ga0132188_1030641	F000040	PVQKVIQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEVLKADIQKYIADAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFAQVSALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHA
Ga0132188_103160	Ga0132188_1031601	F002083	VEIVEMKNDLGDTGAALIEDKKFLADLEKNCKTKADEWAVIVKTRNEELLALADTIKILNDDDALELFKKTLPSAASFLQMDSSSTIRASALAAIRSVQSSSKFDRHHLDFIALAIQGKKIGFEKVIKMIDEMVATLKTEQVDDDNKKEYCGKELDTADDKKKSLEHTISDLETAIADTKEAIATLKDEIDALEASIKALDKSVAEATE
Ga0132188_103261	Ga0132188_1032611	F004250	MLSNALWQTQAALHGTNNNMLVPFLLVITASTFVVYKHFADEHGGDPIKHFLALVVIQMLPLVFLQMKILSCPDPVSMLSRFGAKTLLMHVCFLALRVCAWPLLEIGLGFCNLLGLVVACVALYWGFNFSFSSLRAHRDVFGLWFLAFAGAFCTEALDFRRQVSLLETTIFTTSNYIELLAFVPAVW
Ga0132188_103440	Ga0132188_1034401	F104104	SDFSLKSLIFEWSENELGPNPFLKVGRCDHQFSLEFDPSDLQNEEVPQQLQVVGELCSDKGKAIVSAMGDTIVYTVNPKRKQTDLYDLKVLTVVTDFSGDISQISDDMKCVVGEGDKQKRGAAGHVTLTYAEGGQLVTSMGHWIELTRIDASLESVMRAAAHNFGGLEADEFHRVYMEQATDAARHEWIQTTCHRYVTQSAPS
Ga0132188_103618	Ga0132188_1036181	F011763	GFLSRIGGKSKNATGGKEGAEGTSTGKNNESNVMSANQVPKTYEEMFKFNAAVMGFGTSVWFNEVLACFHNIVTNVSNSARLQEECDILVLRISRVVKGSVNFAEYKSCMLASLRSLLPKDWSTAHEVAWSWLWENVERLLQKNMGNPPRWEKALSKLLGSIDETTAFELRKDIYARFFTAAPAGQDFFKQSNTYLHFIA
Ga0132188_104201	Ga0132188_1042013	F091921	MIELRIVENEMGMKPDIQYRFMLFSVGQGGYLCPPNPDMKWSEWKTAEILGKWVTVEEIEK*
Ga0132188_104291	Ga0132188_1042911	F000077	TADAAKLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFVQVAALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAFDMLMQDLTAQIAQATQDRDEKAETKAKKLQAKADAEGDLK
Ga0132188_104317	Ga0132188_1043171	F012720	FDIPIDEVKAITLHVSPTYALDTVESVTLKSFRKVVGYDTFNSILKKDRDEKKDVADHYNVTVSMMVKRVPEAVSAPPLVDPYDGTKTLAQTLDKGFPYDDADNQPDDQAPRWSKGSAAASLAQLVGKLNGENVTKSALVNLVRDVDSPITQALIQLDE*
Ga0132188_104634	Ga0132188_1046341	F002825	LEKSVEVLEKNNKLSPTLAQVTNMVMGGNAHLRKQPKGYSGVDGARKLLNDMIFEAMSKYDQEIAKCTDYYSKTCAAMEVCRGQIAAANYIAANSRALILDAQANINRCEVDIPTRKYELKQHLLKCKAELYKLNTRLKIVLGDIAVMTMILEMTDCDKSFLQTQHMSLLHCKDPCTNKTFVTFD
Ga0132188_104767	Ga0132188_1047672	F085396	MTRTPFLTRSQRAIARMVQDASGYALSCYSQDDRASARIKLLAIVPTAPDYAPSNKPAKRTKAYFRTLADSMEDNVWRYL*
Ga0132188_104905	Ga0132188_1049051	F000282	MQLFGVLVLVLAPGVVDAAGLTFTKKAKLDINQKVYIENSPVLGDGAGDGALNVCRTFQHAHIDNPDAPAVKVCGTGIKLTAFLLNECDKYYEHSKEIGACNTGMPPNTCQTFSPADDPRFGAYQSYKIEQC*
Ga0132188_105172	Ga0132188_1051721	F001174	MKSVLFVVACFATTVVVDADQSNPLGKVYELMSALEAKIIKEGEAEAKAFKEFFEWCDDASKNINYDIETGKKSQEKLTAKIAELASDIEVGESKIEELAGAIATNEGELKDAQAIRDKEAADFAISEKELVDTVDTLDRAISIISTEMSKNPAALAQIDT
Ga0132188_105843	Ga0132188_1058431	F000267	IEELTASSARLNTEIKNLEKEVAENQAALDKATAIRQKQLAEFNEEEKDNLEAISALKSAITVLSKHNSFLQVPKNSMAAVATSVQEQLQKHASLLVGVLTHKERRTISSFLQSPQDYFDAAPTFKQSYAPQSGEIFGILKQMLETFESNLAASQKEEMANQRAYEDLKA
Ga0132188_105922	Ga0132188_1059221	F005258	EAAAYAKESSEESANIQACEQAYTAIEKGMGAAFLQSRSASRVLRIAEKRQEAELVAFLSESQGENYAPASGEIVGILKQMKDEMEADFAEAKAAEEAAIKAYNELMAAKQREVEALTKAIEEKMVRLGNVQVEIVEMKEDLDDTGKGLIEDKKFLADLKKNCATKAAEH
Ga0132188_106086	Ga0132188_1060861	F005469	AKAEYEALKAAKEDEIATGRKMIVSIDAQIADLQEQYAEQFKQLEDTQEQLALDEEFLKNLKEKCATMDADFDKRTKDRLAEIDAVTETIKILNNDESFEMFDKMQAPNPPEFLQTDASTSEKERRLKAVSALQRAAQLSGNPAVALIAASAQLDAFTKVKAMIDKMVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009862: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, 3m depth; RNA IDBA-UD

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences