NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300009958

3300009958: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 8



Overview

Basic Information
IMG/M Taxon OID3300009958 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0120337 | Gp0151214 | Ga0133742
Sample NameHuman saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 8
Sequencing StatusPermanent Draft
Sequencing CenterAutonomous University of Barcelona
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size6929565
Sequencing Scaffolds8
Novel Protein Genes15
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
Not Available2
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-0761

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationAlicante,Spain
CoordinatesLat. (o)38.3852246Long. (o)-0.5132249Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F036281Metagenome170N
F049707Metagenome146N
F051214Metagenome144N
F067847Metagenome125N
F071329Metagenome122N
F074985Metagenome119N
F081456Metagenome114N
F081510Metagenome114N
F095632Metagenome105N
F105376Metagenome100N
F105378Metagenome100N
F105379Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0133742_10003All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes68697Open in IMG/M
Ga0133742_10007All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes53570Open in IMG/M
Ga0133742_10016Not Available35279Open in IMG/M
Ga0133742_10018All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes33597Open in IMG/M
Ga0133742_10177All Organisms → cellular organisms → Bacteria3895Open in IMG/M
Ga0133742_11084All Organisms → Viruses → Predicted Viral1416Open in IMG/M
Ga0133742_11471Not Available1112Open in IMG/M
Ga0133742_12187All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-076814Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0133742_10003Ga0133742_1000364F081510MKLLDMKAVKAAAKTTYTTSKILTKKYAPFILLGVGLVGYGYSVYEGVKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPLKTKSVEIDGKEIEVESIVPNEGDFYGRWFKYSSNYASDDPEYNEAWVREVDNMMTTRISKVGMITFAEVLDALGFEVPKAALPFGWTDGEGFFLEWDTHEVWNDDKQEYEAQLYVRWKTPRNLYATTNFKDLMPKKTRKELN*
Ga0133742_10007Ga0133742_1000714F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIS*
Ga0133742_10007Ga0133742_1000715F071329MLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDTTVKAVQEARDHVEIED*
Ga0133742_10007Ga0133742_1000717F018385MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0133742_10007Ga0133742_1000724F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYKGILPEKIMKQVAEDPKYKELDSKLKETELKNL*
Ga0133742_10007Ga0133742_1000728F081456MFEEPPIYYILISLIFLIVFGAISMATWMVWLTAISFFAKLVVTAIGFLLAAMTVILYTISAE*
Ga0133742_10007Ga0133742_100078F074985MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTCPQESILLKNIEEYEFIQYRPQKAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDCKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYFLDHIKAMHID*
Ga0133742_10007Ga0133742_100079F036281MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNSEGLITKMRIKNGDLMSNGSVLFLAEERKIYNAKEYYDYWAAREGKPAPFFYEAKQYHVKSFMRVPGSTDLWITAERERGHWYTFRMSDDQNSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0133742_10016Ga0133742_100163F105376MNKNNEQPEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARTNVTQAQLATHEKEAEEKYVKRTEIEGVMNFWKLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELKEEVQTQVRSK*
Ga0133742_10018Ga0133742_1001816F095632MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAVYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKTPSTN*
Ga0133742_10018Ga0133742_1001837F049707VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFVERWTDWDETGWTVWYFRLVGGGIMTFSTREWEQKDDVNHLTTIWMKPSLYDIERN*
Ga0133742_10177Ga0133742_101773F049707VVSEYRSPHNDGHDPYILIWEYGTEVQQAEFVERWAEYEPDTGWTVWYFRLDDGRVMTFRALEWDQRDDVNHLTTIYFTPKRKAN*
Ga0133742_11084Ga0133742_110842F105379MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGIGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLGKITQLEPSGDNPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIITRTDEFHNTDCYNELMAGSASTGAFRINVGEYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIVVNQSMLFLPY*
Ga0133742_11471Ga0133742_114712F105378MNVKVYVDKIKKWVQISSDEVLDINKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNAPITMQDHLENNQIGYDSANSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADAISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0133742_12187Ga0133742_121871F105376MNEKPEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTQVRRK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.