NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300009959

3300009959: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 1



Overview

Basic Information
IMG/M Taxon OID3300009959 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0120337 | Gp0146581 | Ga0124832
Sample NameHuman saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 1
Sequencing StatusPermanent Draft
Sequencing CenterAutonomous University of Barcelona
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size6689130
Sequencing Scaffolds6
Novel Protein Genes12
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationAlicante,Spain
CoordinatesLat. (o)38.3852246Long. (o)-0.5132249Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027205Metagenome195N
F036281Metagenome170N
F043991Metagenome155N
F049707Metagenome146N
F071329Metagenome122N
F074985Metagenome119N
F081456Metagenome114N
F084362Metagenome112N
F101360Metagenome102N
F103434Metagenome101N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0124832_10003Not Available70190Open in IMG/M
Ga0124832_10006All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes46138Open in IMG/M
Ga0124832_10039All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes12111Open in IMG/M
Ga0124832_10061All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes7260Open in IMG/M
Ga0124832_10138All Organisms → Viruses → Predicted Viral3799Open in IMG/M
Ga0124832_11248All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1191Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0124832_10003Ga0124832_1000320F105377MRDFNDLPLLTPEEAFERAWEEGGSAHPVFDRGYRVRGLNDWKAVETLLRQNDVPDITVASFGLKQFEDILSTVLMLHERGWRLWQTSAKVYVDGEIRTVQAIRAHYRGD*
Ga0124832_10003Ga0124832_1000378F084362MNCTFTVRWSDDKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSKTEAEQKGFWWEK*
Ga0124832_10006Ga0124832_1000625F081456MFEEPPIYYILISLIFLIVFGAISFATWMVWLTSIAFSAKLVVTAIGFLLCAMTVILYTISAE*
Ga0124832_10006Ga0124832_1000638F071329MLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATIKAVQEARDHVEIED*
Ga0124832_10006Ga0124832_1000640F043991MSKKNPSVIDYFSLNGDVVEEANEFDGISLEDWIDKRSSIKPSWVGQYSQQMHFDLADDTEVSFYKTPNVIYADILFAGGVRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA*
Ga0124832_10006Ga0124832_1000643F027205VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKAPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0124832_10006Ga0124832_1000644F036281MFSLIRVSEGPVDINDLRARYLGKLETEEGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKIYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0124832_10006Ga0124832_1000645F074985MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYDVDTENAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDAGGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSNTGEQKYLLDHIKAMHID*
Ga0124832_10039Ga0124832_1003912F103434MVTFRPRRGRYLENGPHAVEVTVAVMSEGRTGRRYTPGETFYVDKVLVQPSAGNALKATENRDIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVSCDTLGTAAK*
Ga0124832_10061Ga0124832_100618F101360VSKEDALRRAVIAAHVAKVASQEKKKALNELEEVMAPGDSSKPSIDGRQIGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAATSLDGFIKQTGEIPDGVELVTSDPRISARVSPAQEEAIRELITMGDISLIEIENTE*
Ga0124832_10138Ga0124832_101385F084362MNCTFTVRWSDDKNKPHAKTYATESDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*
Ga0124832_11248Ga0124832_112484F049707VSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMRPSLYDIERN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.