Sample 3300010169

3300010169: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_B MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information
IMG/M Taxon OID	3300010169 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111616 \| Ga0124929
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_B MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	22059551
Sequencing Scaffolds	16
Novel Protein Genes	25
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.539	Long. (^o)	-110.798	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003460	Metagenome / Metatranscriptome	485	Y
F004367	Metagenome / Metatranscriptome	441	Y
F005746	Metatranscriptome	391	N
F006938	Metatranscriptome	361	N
F007225	Metagenome / Metatranscriptome	355	Y
F014385	Metagenome / Metatranscriptome	263	Y
F015874	Metatranscriptome	251	N
F021779	Metagenome / Metatranscriptome	217	N
F028182	Metagenome / Metatranscriptome	192	N
F032666	Metagenome / Metatranscriptome	179	Y
F033056	Metagenome / Metatranscriptome	178	N
F039156	Metatranscriptome	164	N
F045123	Metagenome / Metatranscriptome	153	N
F066811	Metagenome / Metatranscriptome	126	N
F077351	Metatranscriptome	117	N
F084273	Metagenome / Metatranscriptome	112	N
F099357	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0124929_103949	Not Available	602	Open in IMG/M
Ga0124929_107437	Not Available	578	Open in IMG/M
Ga0124929_110331	Not Available	501	Open in IMG/M
Ga0124929_110681	Not Available	1238	Open in IMG/M
Ga0124929_111556	Not Available	656	Open in IMG/M
Ga0124929_120347	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
Ga0124929_124792	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
Ga0124929_125324	Not Available	741	Open in IMG/M
Ga0124929_131366	Not Available	683	Open in IMG/M
Ga0124929_135908	All Organisms → cellular organisms → Bacteria	2149	Open in IMG/M
Ga0124929_138974	Not Available	590	Open in IMG/M
Ga0124929_140541	Not Available	534	Open in IMG/M
Ga0124929_140796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	767	Open in IMG/M
Ga0124929_144006	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
Ga0124929_146501	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
Ga0124929_148361	Not Available	746	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124929_100732	Ga0124929_1007322	F007225	MDVPADVPQSPINGGGSLAFNFNPRYIDIKLFDGVTGDPITIAQAVAGAEVGQIVNLGGYVFPGTTIDGENLVGAAAAGARKNADGTIGVRIAFLSTNRLVFNENHAEPFVRTGTRRNRRLPVVIVNWLNIRDDFGVNGTYTVENDWSFVLVYTGTGSDATFRTQQV
Ga0124929_103949	Ga0124929_1039491	F039156	VITIGLVAVVLTRLWVKQISLRLDESLEFDQKLVPLRNALAALRDATALAHSIARELQTLQQLREEASTVITELQSLREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTRLRKEPENEGL*
Ga0124929_105476	Ga0124929_1054761	F007225	IYGATATGNSTGLGGGFEGGFLNGQEFDLRIRMDVPADAPLSPINGGGSLAFNFNSRYIDIRVFDTVTGQTTTIAQAVANAQVGQIVNLGRYAFPGTTIDGATLVGAAAFGARRNADGTIGVRIAFLSTNPSVVNENHADPFMRTGTRTNRRLPVVIVNWLNIRDDFGMNGTYTVQNEGSFVLVYDDNGENTRSGTRQIDPVTSGEGVPAFCRPQRTASG
Ga0124929_107437	Ga0124929_1074371	F033056	ETHMRIQKPSPRQTAEQAAQQADAILSELQRTPPLLDVWCRLGVVWTKLGKPERAQNAFSAARALLAELPCDDTPGARLEIKYACTVLGTALALAGQVEQARQLVATTPCIERDTVLQRMAAHCTDVGSLQEALAVALAIQDATTQGMVLEPLAKAADESRQFALRDQALAQMRNPLRRADALYHIVRRRLE
Ga0124929_110331	Ga0124929_1103311	F015874	MSEELGHRLKEEPVGTTIRGRTKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLATRCNYIDPETSYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYVVCATADWPSAEEFAQAYGKWLNALPIYLLVMECAR
Ga0124929_110681	Ga0124929_1106811	F077351	DMSNLRPQYGKPVGRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAVMEMSRSLPSDVDAAPSFVVNVVERGESVVVQSSYPLEDITPRHTLWSAIALSPVPEYGPPRTVYMEWDRTLIASEILRAIKEEDD*
Ga0124929_111556	Ga0124929_1115563	F066811	MEFNNQPQFNAPGMTDILNAATSIFNPFVSVIALAIGVTLGARMLGRIVRLF*
Ga0124929_120347	Ga0124929_1203471	F028182	ISEAARRLETTEEVIREWIRLGLLDVEPPPAKPRRTRELNLAFQPTSATPEPKVDLEQLYEVAEREGWLLLSLEAWDMADAETACQLSHTGTIPPL*
Ga0124929_124792	Ga0124929_1247921	F032666	NPFVPTIVGHPHLGPVDLSGAGPFPALQSGVLPADQVGIYTLFLSVHPDQDWLLGGPNRSPRWSTLSFSITYDSNYIDFVFRDPDDGTDVHVSSLAVGARFSPYIRANFPAEGIAAGQVNARVGSLVTVTFALAATTNGNGVAGPSGFRGYLRDWFKNDYDGEPLRVRVNGPAIAALS
Ga0124929_125324	Ga0124929_1253241	F099357	TLFSFGLLLVGPLHAQNSCGAWYDVDTVPSLFGRWLWGGWTRPEVYYVRPGGDYIWIGGDTLLNWAWWGSCGQGSTSSPSRRVPIFINLSAGDSCRLQAVVWGQVWGRPCRDSLSLLVIAHPGAWGHCYGSFSLAGQAIPPGATYTLQHAGHYTATFTAHSEWPYTSMYRVRWRLSGPVRIDTTFLTQPLTSPTTLSLPLTQPGVYTLTIGYFIYMGGSNGCQDSLRYTIYVLQDSTGWGCPTNFP
Ga0124929_131366	Ga0124929_1313661	F005746	PLVSHRYRLLLAKAVGRWVHASGFDWTKERVGALVQYLLKLRAGENPCRPPWWSSRYLSYAERVATTAPFEKFLQLVQAWRTALTAYGRLKSVPSRKDVEKFEKAVGSARVLTVPLASGRVVEVDTEDWRSRFPFRAHFGISPRQVLPEVRIHGEVFPNNPLSLKLTTGKGYYTQTGEELFRDAWWIMQDHVLHPPGTVPA*
Ga0124929_131581	Ga0124929_1315811	F006938	TGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQNIMEKAKRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFELNLIEGAFADAYQEALLARN
Ga0124929_132189	Ga0124929_1321891	F006938	MLHIRVTSVGGGGLSEAELVSDTPLTPILAVVKTGHVVDRRAVANVSRLFGKEVRDLARHFTRSGASLELLYESLRKYDHNDIAWSALDDDVRARLSDAMNEAFRVFGVKGLKPKPLNEVSVEPSSPGASWRLYGRMGKRTDFDVYTEGLARAQLIFERAKRGKQPFCRLPPCLAYLRTQLA
Ga0124929_132560	Ga0124929_1325601	F006938	RVTIGRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALSEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYTEGLARAQNIMDKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFELNLIEGAFADAYQEALLARN
Ga0124929_135811	Ga0124929_1358111	F006938	TGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQNIMEKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFELNLIEGAFADAYQEALLARNA
Ga0124929_135908	Ga0124929_1359083	F084273	LKSVIRAVALAAVLLLAAGVADAAAVDKNILACGQNVGRLILSDPAVYDDGTLGGVTVQGSFSGNYPPLRNGIEIRWVQLISTSHPWLTNAAPNTPYFDPGELDMTGDYDPFYWNTTLQGKDNNNYPQFWYKTYQFNGGQGITFYDQPKRLKSSAPVSWLAELNLVCWETGTKNFSVLWTGTYGFNIAQNGNVTVNGWNELANPAWLTQARLTQYFPDWTMSDACRNCLVPEPVFLQMGALLGMSGLGVVASRRRAGRRSS*
Ga0124929_138114	Ga0124929_1381141	F006938	MLRIRVTIGRQNGLSEAELVSDEPLTPMLGTVKTGHVVDRRAAELVEELFGKEVRDRARNYTRSGATLELLYASLGKYDHGDVAWSALSDDIRARLRDAMNEAYKVFGAKGLTPKPLNEVKIEPSSPGASWRLYGRTGKRTDLDVYVEGLARAQTIMDKAKRRKQPFCELPPCLAYLRTQLAPRNSPKVRLVWGFPFEINLIEGAFADAYQEALLC
Ga0124929_138974	Ga0124929_1389741	F004367	FQEVSMGDETARNGRDRSDQWVESLLTNAGASVGRVLDDRQRRAVCLAVEVFAYLLAALPSEKVLVTDVIRLLKWYSEGVRHAEGSS*
Ga0124929_138974	Ga0124929_1389742	F003460	MPKAARDERYFHDLQHAYEALHSVLTPRGLYAEVGMMLLVNMRRPSELRDVVVELVIRGRAIGSPVWRVADGLRVPGRMKLRSVASVLFGLFMRAAYDIEASISLPGDDKPQRPG
Ga0124929_140541	Ga0124929_1405411	F015874	MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLAARCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVL
Ga0124929_140796	Ga0124929_1407961	F021779	GVVCANTSETQPASITITFTNRAGTVESTYSDTIDPLSSKGYNTRFGANLPVAQRDLIRGLDLGGTSSTPNFVGSAQVTSSQPLICIAKQIYDKDAAAIPPGSPASEDPKTRQSLGYNGINLSDAKTEIFLPIAWRINNQPTCGFWRYTGLIVQNAGAGNANVTVRAYNNAGTLINTWNDPAPLAPFTPRGYNTRFNAGSGYGTDSAVIAALGANFDGTLRLTSTQPLVAVAESWQNCDSGSSPMTDSNITELN*
Ga0124929_144006	Ga0124929_1440061	F032666	SLCCEENEHTIFMQRSRCSVGSVRPELGNQPQKGGCVMKRVLTLIAATALTASAVMAQTIVRISAYNPFVSTIVGHPELGPVDLSGAGPYPALQSGVLPGNQVGIYTLFLSVHPDQNWLTGGPNDSTRWSSLSFSITYDSNYIDFVFRARDGSDVFVSSLPVNSVFSPYIQENPPARGVAAGRLEARNGSNVTVTFALAATANVNGVRSSSGFNGYLRDWFRDLYPEPSSGEELPLRVRVNGPAIAGLPNQTYSVSPGIPEGNIIIQVNPADSSRNVIVDGRFIVPE
Ga0124929_146501	Ga0124929_1465011	F045123	VRETLTRLGYAEHEDFEYEVEVRLYGNRRLYADVMLFQGDTPLVVVEVEGNARQQREGYEEARLKGAAWNLENPVPLLWVAAGNHDALYQLQPSQSSIRYAPLEGVSPAELLAPARLLEAIGDYLRRTETEAGQELRYRDALQRALAESRGNSAHEKFRNWIDALAGASPRKRLPTPLQEAQQIVRQARQSG
Ga0124929_148251	Ga0124929_1482511	F006938	MLRIRVTIGRQNGLSEAELVSDEPLAPMLGTVKTGHVVDRRAAELVEELFGKEVRDRARNYTRSGATLELLYASLGKYDHGDVAWSALSDDIRARLRDAMNEAYKVFGAKGLTPKPLNEVKIEPSSPGASWRLYGRTGKRTDLDVYVEGLARAETIMDKAKRRKQPFCELPPCLAYLRTQLA
Ga0124929_148361	Ga0124929_1483612	F014385	VIHSESHDWFEWVQLALVRSALEQLTPEEERAVWLYAEGATLAPKQRTLAETALQKIRRMLGVNAP*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010169: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_B MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences