NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010172

3300010172: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2000_B MetaT (Metagenome Metatranscriptome) (version 2)



Overview

Basic Information
IMG/M Taxon OID3300010172 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046783 | Gp0111618 | Ga0124931
Sample NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2000_B MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size6253711
Sequencing Scaffolds9
Novel Protein Genes13
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-0061

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006938Metatranscriptome361N
F007225Metagenome / Metatranscriptome355Y
F011398Metagenome / Metatranscriptome291N
F014979Metatranscriptome258N
F015874Metatranscriptome251N
F021779Metagenome / Metatranscriptome217N
F039156Metatranscriptome164N
F054065Metatranscriptome140N
F077351Metatranscriptome117N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0124931_101079Not Available577Open in IMG/M
Ga0124931_101178Not Available610Open in IMG/M
Ga0124931_101705Not Available510Open in IMG/M
Ga0124931_103476All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006553Open in IMG/M
Ga0124931_103614Not Available763Open in IMG/M
Ga0124931_104623Not Available676Open in IMG/M
Ga0124931_105975Not Available756Open in IMG/M
Ga0124931_107216Not Available1480Open in IMG/M
Ga0124931_114431Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0124931_100412Ga0124931_1004121F006938REVIMLRIRVTVGRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVETLFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQNIMEKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFELNLIEGAFADAYQE
Ga0124931_101079Ga0124931_1010791F014979VIADPRLAEAYRECSALLGLEISEPKSLAGRLGEFVGRLIAPDGVGFKLKAPPGLDARTLAAYLSLVGTRALRIWEQSLLRDVIALIPREGYPGSNPGGLPREAVDQFLIEYFSREREVEPPRVYAVDPDHTVRARIGPLYSMSLVLPRDPTTTEWEPRGSAKSGPGGAPEPSPYGERVPGSDRSPGWLRRV
Ga0124931_101178Ga0124931_1011781F011398IWRMTPSYDAMLYQSKHKRENLFKLSTYGDGTWLVFEPERLRPLYGQYTSLSAADLPGEQTWSFRFTYDTSIPDFLSSQACRNNPDVRRGYPESLAKLLGDDFPGTVRIAKTYTLLGNDYLTFAIVFSQPLDEVARLVTDRLGKTLNASLSPASVQIYGQRATRISLSRFLYQLNVEAIALDSQLTLVRGREVRFGGQSR*
Ga0124931_101705Ga0124931_1017051F015874MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLAARCNYIDPEANYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLP
Ga0124931_103476Ga0124931_1034761F021779GSAQVTSSQPLICIAKQIYDKDAAAIPPGSPASEDPKTRQSLGYNGINLSDAKTEIFLPIAWRINAQPTCGFWRYTGLIVQNAGTSDATVTVTAYTTAGALVNTYNDPTPLTPFTPRGYNTRFGAYSTAVGSALGPNFDGVLRLTSTQPLVAVAESWQNCNSGSSPMTDSNITELN*
Ga0124931_103614Ga0124931_1036141F014979LAEAYRDFSALLGLEISEPKSLAGRLGEFVGRLIAPDGIGFKLKAPPGLDARTLAAYLSLIGTRALRIWEQSLLRDVIALIPREGYPGSNPGGLPREVVDQFLVEYFSREREVEPPRVYAVDPDHAVEARIGPLYSMSLVLPRDPTTTEWEPRGSAKSGPGGAPEPSPYGERVLGSDRSPGWLRRVREA
Ga0124931_104623Ga0124931_1046231F054065MAAFPLVSHRYRLLIVKAVDRWVHASGFDWTKERVGALVQYLLKLRAGENPCRPPWWSSRYLSYAERVATTAPFEKFLQLVQAWRTALTAYGRMKSVPSKKDVEKFEKAVGSARILTVPLASGRVVEVDTEDWRSRFPFPGPLRCFTSTSTSRGSNPQRGLPQQPTVPEAYHR
Ga0124931_104830Ga0124931_1048301F006938MLRIRVTIGRQNGLSEAELVSDEPLAPMLGTVKTGHVVDRRAAELVEELFGKEVRDRARNYTRSGATLELLYASLGKYDHGDVAWSALSDDIRARLRDAMNEAYKVFGAKGLTPKPLNEVKIEPSSPGASWRLYGRTGKRTDLDVYVEGLARAQTIMDKAKRRKQPFCELPPCLAYLRTQLAPRNSPKVRLVWGFPFEINLIEGAFADAYQEALLCRNAPVLPRTNRWVAMAIDHVKQSGTPVGLDWSRFD
Ga0124931_105224Ga0124931_1052241F006938LLLSGPEVYDMLHVRVTAAKADGLSEAVIESDQPLKPMLAVIREGHAVDREAMELVERAFGKEVRDLARHYTRSGATLDLLYESLMKYDHSDVAWSSLNDDVKRRLQEAMNAAYKVFGVRGLKPKPLNEVAVEPSSPGASWRLYGRSGKRTDFSVYAEGLARAEIIFRRAMRRKQPFCQLAPCLAYLRTQLAKR
Ga0124931_105975Ga0124931_1059751F077351VKVTVKAERLEGFWRDVTRQWNRQVLNKVPGSQDLLLTEEEWLTLWRGILATRCHYIDPEREYPRYRFIVPKRCEVPLLMWEALWNFGIYRSKWGADYVITAEAEWPSQEEMSRVYAKWLNALSAYLAVLEMSRSLPSDVDAAPSFVVNVVERGGGVTVQSSYPMEDVTPRHTLWAAIALPPVPDYGPPRTVYMEWDRTLITHEILRGLREEDD*
Ga0124931_107216Ga0124931_1072163F077351SAVYAKWLNALSAYLAIMEMSRSLPSREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAIMEMSRSLPSDVDAAPSFVVNVVERGESVVVQSSYPLEDITPRHTLWSAIALSPVPEYGPPRTVYMEWDRTLIASEILRAIKEEDD*
Ga0124931_107873Ga0124931_1078732F007225MRKFAAITALLAVATTASFAQFGIYGATALGESTGLGGDFQGGFVNGQEFDLLIRMDVPAGVPRFPRNGGGSLAFNFNPRYIDIKVFDTATGTPITIAQAVADAQVGQIVNLGGYAYPGTTIAGRDLVGAAAFGARKNPDGTIGVRIAFLSTNPSVVNENHADPFMRTGTRTKKT
Ga0124931_114431Ga0124931_1144311F039156FSNTLVLVVVGAVVTIGLVAVVLTRLWVKQISLRLDESLEFDQKLVPLRSALTALRDATAQAHSIARELQTLQQLREEASTVITELRALREDFAQTYNNMLVDLTTHGETLVEMSCQLKEAHDQLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLR
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