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Sample 3300010211
3300010211: Intertidal zone phototrophic microbial communities from Little Sippewissett Salt Marsh, Woods Hole, MA - SCR11c
Overview
| Basic Information |
| IMG/M Taxon OID | 3300010211 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0120452 | Gp0154479 | Ga0136461 |
| Sample Name | Intertidal zone phototrophic microbial communities from Little Sippewissett Salt Marsh, Woods Hole, MA - SCR11c |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Marine Biological Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 80979748 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Phototrophic Microbial Communities |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Phototrophic Microbial Communities |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information |
| Location | Little Sippewissett Salt Marsh |
| Coordinates | Lat. (o) | 41.5758508 | Long. (o) | -70.635807 | Alt. (m) | N/A | Depth (m) | .15 |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F012659 | Metagenome / Metatranscriptome | 278 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Ga0136461_111363 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1430 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0136461_111363 | Ga0136461_1113632 | F012659 | MMQKQTDEQLLDVLVEIRNLMRVAAREPVKAALEAALPDEKSRSAYQMFDGSTSIQQVRTACKMSPNAVVALAGRCTSMGLMEVTKENKRIRLFDLNDFALLEAGESSKSGGKE* |
