NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300010262

3300010262: Eastern black-and-white colobus group fecal microbial communities from Wisconsin, USA - Cm1105 metagenome



Overview

Basic Information
IMG/M Taxon OID3300010262 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0120398 | Gp0147153 | Ga0129317
Sample NameEastern black-and-white colobus group fecal microbial communities from Wisconsin, USA - Cm1105 metagenome
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size206085762
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnimal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Eastern Black-And-White Colobus Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)43.07Long. (o)-89.4Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032286Metagenome / Metatranscriptome180Y
F051936Metagenome143N
F061388Metagenome132N
F076064Metagenome118N
F076190Metagenome118Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0129317_1000243All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales65841Open in IMG/M
Ga0129317_1004873All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae5140Open in IMG/M
Ga0129317_1009114All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2840Open in IMG/M
Ga0129317_1023540All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis1260Open in IMG/M
Ga0129317_1025659All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1173Open in IMG/M
Ga0129317_1048658Not Available699Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0129317_1000243Ga0129317_100024357F076190VRTAGGSITISVKDVFTAASRVSGHVWSLVRITVPNGLKSVKIGVKKPQNNFLYPYFQREPL*
Ga0129317_1004873Ga0129317_10048731F032286MVKWVCQTVTSVRHRALVFNTRLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSECRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRSDCKTILAKNIALSRISKRS
Ga0129317_1009114Ga0129317_10091145F061388MPEGGADMGGRGGSSHRQTAGGTAAIQTFLQNAYGANHANAVLAILQNAPAHIRALWEQYAAQFRATNMRRDEGAFYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMADYLIARGEGYSHISYSDLFQGVGAGGKPILRHGSAGGLLGRTAKDELEGHLSRMRRQNPNMTRDQAARALVSEARGKYSMLDRSDISDMFEGAGIGISHPLGAGHGLDYWSSRGNGKEIFAEILSAEAAHPGSLKAIKEYFPKTYQVYQDMMKARKKR*
Ga0129317_1023540Ga0129317_10235401F051936QVLFFPLALRGKAFGFSVLQENAVMTPVISIFFVMLMIRYLSIHISIKK*
Ga0129317_1025659Ga0129317_10256592F076064LKKTIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPCHVVANDEAYYAAMKGISLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKP
Ga0129317_1048658Ga0129317_10486582F051936QEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFETLIIKYLSIQISIKK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.