NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010393

3300010393: Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 0.5m metaG



Overview

Basic Information
IMG/M Taxon OID3300010393 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111485 | Gp0138765 | Ga0116196
Sample NameHot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 0.5m metaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size216124024
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
Not Available4
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_46_16b1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Archaea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Oklahoma, Zodletone Spring
CoordinatesLat. (o)34.9956Long. (o)-98.6889Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017852Metagenome / Metatranscriptome238Y
F020727Metagenome / Metatranscriptome222Y
F025653Metagenome / Metatranscriptome200Y
F037787Metagenome167Y
F043801Metagenome / Metatranscriptome155Y
F047154Metagenome150Y
F054137Metagenome140Y
F070129Metagenome123N
F071370Metagenome122Y
F091056Metagenome / Metatranscriptome108Y
F092080Metagenome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0116196_1003674All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.2117Open in IMG/M
Ga0116196_1005825All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1759Open in IMG/M
Ga0116196_1006213All Organisms → cellular organisms → Bacteria1715Open in IMG/M
Ga0116196_1020045All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1051Open in IMG/M
Ga0116196_1030453All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria875Open in IMG/M
Ga0116196_1030552Not Available874Open in IMG/M
Ga0116196_1042847All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_46_16b757Open in IMG/M
Ga0116196_1052076Not Available697Open in IMG/M
Ga0116196_1054537Not Available684Open in IMG/M
Ga0116196_1067418All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium625Open in IMG/M
Ga0116196_1072876Not Available605Open in IMG/M
Ga0116196_1079579All Organisms → cellular organisms → Archaea583Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0116196_1000689Ga0116196_10006893F091056MRMFIIVLAAAALLAIPVAASANGSAVDQFSAVKYIRNLSDLACQYRDHGLSLQLDGYNYEWLIFQDSCIRDNIEAELIILGRSREHIIDPLAWQLHVDMLGATIEQINTISDELLTYNFYPNQDRIVQKIQRKANEGSGVLGDIEDELGRGEERNYADLATYGETLWLIGNDLICLVKDLDFENWTALYSGDLCAGDCGQNSFEVQTACWECGSESCNGCPEVGCATVQGKECETKRCAPTNKCKGKGCKQNTCGHCR*
Ga0116196_1003674Ga0116196_10036742F043801MTKKLTGICPCGFSFTTPHGEDDAVAVMQYHVKLVHEKEYPNGQTRAEAMEHIKEVE*
Ga0116196_1005825Ga0116196_10058252F037787MKIYSDDPNLPYKTTKLKALYTKSEIDGLFAKWGVKDVYWHWDPEHNDIFVQFKIAEEIDGVLLQVSAKVEAPSIWDHRTRSKAEGVNWDNSMRVMYWFIKSHLEAAYLLQSSKTAAFLPYIASKDGAKVLKDILIPRMNQIQQLAALPQKPVEKVIDVE*
Ga0116196_1006213Ga0116196_10062133F092080MQDKRITIRIPFEIWKGLRELQTMGKISSIQQAAVTGMVNLIESLQAGPGQNQREAAKKRVLNILVKEKPLGNWEDVHRERTDADACRS*
Ga0116196_1020045Ga0116196_10200452F070129LLQAIKQDVKHRVDEIVDEAEQAAMTLESERHVDQVLEQALALVEEALAEAAHAMAREIHRERAS*
Ga0116196_1030453Ga0116196_10304532F047154MYMPYECEEARLSAGEIAEIYRNMKARGLSYIFCQACSEEMKPEQARKSATGLILCRPCHMCNDTDATQEEIDQAIDEDFSGYLACFNQS*
Ga0116196_1030552Ga0116196_10305522F071370MEGLSNKAQAALVGVSSGLIAFGTAAAAVPDFIPAEVKVPIAVTAWLAGVIGFSLKEALGGKGA*
Ga0116196_1042847Ga0116196_10428471F017852KRFISLSYTIPVESEIMPTFLIISRHSPENCPMNNEKMKRMTLELPDKLGGLEKKHGIKRVGVWTVIPEHLLVWVYEAPSSEALQKFSMEPEMVKWMAWNTSEIKLAMSLEESIQLLK*
Ga0116196_1052076Ga0116196_10520761F070129MQYSATTEALLQAIKQDVKHRVDEIVDEAEHAAMTLESERHVDQVLEQALALVEQALAEAAHAMAREIHRERAR*
Ga0116196_1054537Ga0116196_10545372F020727VFGLEKSMQKYLVLVKTIPGKGKEFWEDFSKMPDKPREGVMIESSWSLYGYWDFVIFFKADSNENSLHFVGENLRAIRGISDTSTSPMTILKEHIKM*
Ga0116196_1067418Ga0116196_10674182F054137MMYVVRNRYKESLKPADFPKVNKLIDEGIIPAMEKVQGVRSVRAFNALSGEVILLVEIDELAAIDRALVDEEYGRIAAGMFDYMVRVGGEVWYDRRSWAKCYGRDTTTQERP*
Ga0116196_1072876Ga0116196_10728761F043801MAKKLSGVCPCGFSFVTPHGEDDAVAVMQYHVKLVHEKEYPNGQTRDEAMEHIKEVE*
Ga0116196_1079579Ga0116196_10795791F025653PMKYFESKLKTMCLAELKDYRKRLDESIKQKIDQTAPNEQIAPLILYRGIVEHEMTTRMNKMKNQ*
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