NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010994

3300010994: ECM14MPS05_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)



Overview

Basic Information
IMG/M Taxon OID3300010994 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121658 | Gp0160596 | Ga0139328
Sample NameECM14MPS05_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
Sequencing StatusPermanent Draft
Sequencing CenterMolecular Research LP (MR DNA)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size51010612
Sequencing Scaffolds25
Novel Protein Genes26
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
Not Available10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon5
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon SG8-52-31
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM011

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCwc Coastal Marshes
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → freshwater marsh → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationLouisiana, Port Sulphur, Bay Sansbois east
CoordinatesLat. (o)29.45083Long. (o)-89.75005Alt. (m)N/ADepth (m)0 to .02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004134Metagenome / Metatranscriptome451Y
F007209Metagenome355Y
F008068Metagenome / Metatranscriptome339Y
F009657Metagenome / Metatranscriptome315Y
F011355Metagenome / Metatranscriptome292N
F013484Metagenome / Metatranscriptome271Y
F017958Metagenome237Y
F028081Metagenome / Metatranscriptome192Y
F033261Metagenome / Metatranscriptome178Y
F036302Metagenome170Y
F037495Metagenome168Y
F038536Metagenome165Y
F050784Metagenome145Y
F053661Metagenome141Y
F053906Metagenome / Metatranscriptome140N
F069658Metagenome123Y
F069686Metagenome / Metatranscriptome123Y
F070269Metagenome123Y
F073189Metagenome120Y
F076640Metagenome118Y
F080661Metagenome115Y
F087115Metagenome / Metatranscriptome110N
F091298Metagenome / Metatranscriptome107Y
F091953Metagenome107Y
F094910Metagenome / Metatranscriptome105Y
F095151Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0139328_100405All Organisms → cellular organisms → Bacteria3345Open in IMG/M
Ga0139328_101295Not Available1832Open in IMG/M
Ga0139328_101330All Organisms → cellular organisms → Bacteria1813Open in IMG/M
Ga0139328_101527Not Available1706Open in IMG/M
Ga0139328_103317All Organisms → cellular organisms → Bacteria1218Open in IMG/M
Ga0139328_104081All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1128Open in IMG/M
Ga0139328_108397Not Available872Open in IMG/M
Ga0139328_109025All Organisms → cellular organisms → Archaea → Euryarchaeota849Open in IMG/M
Ga0139328_110642All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon803Open in IMG/M
Ga0139328_112644All Organisms → cellular organisms → Archaea756Open in IMG/M
Ga0139328_115678All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon703Open in IMG/M
Ga0139328_115766All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium701Open in IMG/M
Ga0139328_118256Not Available668Open in IMG/M
Ga0139328_118315All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon667Open in IMG/M
Ga0139328_119044All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon SG8-52-3658Open in IMG/M
Ga0139328_124395All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon606Open in IMG/M
Ga0139328_127793All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium581Open in IMG/M
Ga0139328_130227All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01565Open in IMG/M
Ga0139328_132174Not Available554Open in IMG/M
Ga0139328_133220Not Available548Open in IMG/M
Ga0139328_134008All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon544Open in IMG/M
Ga0139328_136477Not Available532Open in IMG/M
Ga0139328_137560Not Available527Open in IMG/M
Ga0139328_137830Not Available526Open in IMG/M
Ga0139328_140149Not Available516Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0139328_100405Ga0139328_1004056F070269VSQLVAEHELQEELPPIGVDGPSLLLEKEAKEENIRFAPL*
Ga0139328_101295Ga0139328_1012951F013484VQAILEAVITEHALPDDKALAQAVNGYLAEAQEPWDGQVTASMVETIRLRLGIQRPTLIQQLQAANDSQSPVQEKVRLGRTNAGGAFILAVLLVETGWVKLAQLLPMAPGYAVTAVQWLLTAIFAVIYDVRRAFHLDDVRDIGFALITGRARPLSHSTFQHLLHAIPAQAAWRFYEATARWMVRGLGAGVRRISLDGHNLPRYTKVVDVIKGKIGNTGRVLKAEEMVLAFDLDAWLWLALRVFQGAKKLSQALLEMVAELRQHRTGIEGLWRIFFDKGGYKGQNFQALSALPDVHFYTPAVRYSSNVEQWEQLEEGDFDPETFVFDKNADLPTDQRPVYHLADVTMTVNIREKHRVVGTVELRAIVIHDPEGQTPAERWPLVVLTDDYQIDARELANEFGDHWGQEFGHRIGKHDLCLDIVPPGYRLTSRRDENGQLRREVEYDPTAFFLSSWLRCLVFNLMSLFAKRLGGEYAKMWAGTLLRKFIRRPATLYLIGNELHVVFDPFQDQDDLRPLLDELNAKRVGLPWLNGLVVQFSINDDEPLHPLAEPERRNRLLGSG*
Ga0139328_101330Ga0139328_1013301F008068MEMDEIIVAGEPCLVIRSPLIPRTLLCNSLLQPLLSRLKGPEEFVAFASEPCIAPRDLDVVLVTAFWPRCVFNQASEEAVSKPLQTIKPQHLMLVERELYMKLSKKSCLFGDFIDSLLLHNEDRRKVSELLSKVRSWIRDNKSYGLFFLTDVRGMEDFVDQTAGIFEIVVKAEVETEQDEPLLRFTIMKHPSIAEIDKKIEVAFEKGQPKRRRG*
Ga0139328_101527Ga0139328_1015274F050784MKEMWTESGFTKRNRGRMGIMGSIATWLGVAFAIVGIISEATITLLGLYPTSWYLLAIASFVFSLGCWLGWAVGIYLHDKETESQE*
Ga0139328_103317Ga0139328_1033172F033261TTTRDEQDRLQRQVEYDTTSFFLSAWLRCLVFSLMTLFGQALGGECAKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDELQPLLDRLNAKRTPLPWLNNLVVQFSIAQDEPLHPLTEPEKRNRLFGEG*
Ga0139328_104081Ga0139328_1040813F094910MVPVVVGAQDECENPCDYTPPEGGPLPAKTTKTLAGAAVWTYLGVQDIMGRAVCATTGQMAANLGGWSDELGVIAVDVSAQVLDGVAGLVEAAIGQFLPDFEDLGKSVADMLRGIAEAIGGTAEA*
Ga0139328_108397Ga0139328_1083971F036302MLSENCQDTVRGQFKGWPAFLLTARQYGEVVLPDAASGQGPGTPRQRGLKFVTVQGGYGVLFAVMVQILLSITRVAVQV*
Ga0139328_109025Ga0139328_1090252F069658MSEEISEVVKDEIFRLIAIPGIEVNDIPDKVNNKYGTKLDTEKVMNILSDEYLKYNLDLGRRLCCRF*
Ga0139328_110642Ga0139328_1106421F073189MLSTIDILSLIEEQKTVDIKQLSKKLEISLGNLKEILIDLAKYKLIEYNEKTGKIKLPNWLTKIDREIEELKPATEAIILSIYQEIKIQDLTIGNFTKSDLELKVRLKARLKEIVICDLS
Ga0139328_112644Ga0139328_1126442F009657VIEIKEYEILYDTGEARKLVAQINRMAKEGWQAKSIGALGAPTGIRAVYVLMEREVS*
Ga0139328_115678Ga0139328_1156781F069686VSIHLHTTISAKTDKILEELAKTYGTKSRVLEQALETFLRVEKVGSCEDCAVKAKMTEQINLRETLDLTSVDKKTLNGLLEVAIGDKSFEDFIKEQQIDARNLAAILKDSIGWKTPASFKELLLLLEEIKDLTRLFDIASHNELDNTVVL
Ga0139328_115766Ga0139328_1157662F017958YRLVSGGWERYFPDRPEISNMTDLAQYDAFLILLTADVTCEMPVADPPGSERTLDWGVGWQNDGWTGADGTAAQDAFACADGSYAAAYRLVGGGWERYFPDRPEISNMGPLNKYDAYLILVTAPVSCTMAIAP*
Ga0139328_118256Ga0139328_1182561F037495MNDMDDSASDEEQLATEPMDYSDLMAMTRPLVITEDALRSLRGEEVFRLGFGSSPGPADRRAEFALRIGEILCPGAECDAARGSIFAPGKTGPNLKLKIYLGMS*
Ga0139328_118315Ga0139328_1183151F076640LILPLGALVAILVAVVFYLARKEDTMRHKEVETLNELMHTGTVDKENFSAALQGLVRNKLIDKTSFERLGKLLEDSFNDSEETCSQPEPA*
Ga0139328_119044Ga0139328_1190441F095151MTDFSKYKNVTVDNDTYATITKMQTKLKKDIKLSRSQV
Ga0139328_119044Ga0139328_1190443F011355MKSLVVIVVLLIGPDNLEKNYYPVDTEDNCAVVGQRIIEQIAKYKDNIGEHQGWYTLDNKLVIGHYCNVK*
Ga0139328_124395Ga0139328_1243951F028081MWVREGFLMDQEEALQRLQKTRKENEEAYLKAKAFMDGFRARGQLSQKDSEFLFLLEFVIKGFKNHGNDIITAFENQVRFNEAFNNLLAKVNDLENEIRQLRITLDKMYQDR*
Ga0139328_127793Ga0139328_1277931F091298MSSAAKLRVASSAQVLEHLSIGEPIQDTRVTDLLDLDPLVVSRWLCGEDLRGIYQPIVVRHSVLDGLDLEGRTFYEIVELVGCHVAVAHFKHAYFYSSLLVEDCVFEGDFDGRGMQSDGRVVFHNTVFAGWADFSALSVRGRADLVDVSFPGGTNLLRTLAN
Ga0139328_130227Ga0139328_1302272F004134KHPTKDWEFDDTIEVAFQEWFNEEYGNFSFRCEWLYGDCEVEDVRTRQDLMYKWVHSAFVMGYNSGRLEGTKVGLTNND*
Ga0139328_132174Ga0139328_1321742F053906MRYPINCNDSQSVWTLRLNPITGTARVRWFNSPLTEYRHTHVSRRAILGMLWYSGKTSKGGWVNRHCLEKSDSKRLNWRPTLEQMAIQQLSTAQPMGRFSTL*
Ga0139328_133220Ga0139328_1332201F087115RCQLHGKLLNTVTPETVMRISKRNPCHVTFIRDGDTTTIVEDAGGRLGLDLEVQGLFTGDYKQWKPEMGASAMVWLKMRPNKFSELSWKNKSSYSLVKLESPTLADYLWKKETKKLGSVICNGHIYQVKYQKFRVEGSDNYEDVIPLDGVVEG*
Ga0139328_134008Ga0139328_1340082F007209RYKYTLTKEGERRCSRDEFYLQDTPTYKGYTERIFRSLHRSQRPLTVRQISEMTGIETRSVNGVITFNIYAGYIKRIFL*
Ga0139328_136477Ga0139328_1364771F038536MDLRLLRRRAEMIDAVCTGLHPSAVIGQLAEKYGVSEKALWSDWLRREKWVPFLLELEKFADFSGMVVERLNGVQKAAWNIYLKARNDSARVGALRTVLEALEIHRDIVQTQDVLDRLDKLEEVAKERDKAFR*
Ga0139328_137560Ga0139328_1375601F091953MVELLATTVISCSDAFRIVNRIGNVIGLSYQQKIEVIQVISQHIPTCPIKIIPDERPESSN*
Ga0139328_137830Ga0139328_1378302F053661VGKVVDMKDYYQTNKGRLLGIGGILIIVGLVLYFARDQEVVLVLPIIGMVLFIAGVVYKPRKKNTENVAKEAQ*
Ga0139328_140149Ga0139328_1401491F080661MNSFERIWAALNLEEPDRIPTHTINIDGNVADQVLGKPERNTFDVFDELEEKDPEHWIDKINEIIFDIEIMVFAKALRAGYELGFDGVGIQYIPFIFESREEMTDIFGKRHKVKNIEGNPYPDYYGGYIKNREDWEAYPKPDLKQEYKNAKKFYKGVLRKCRDIK
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