NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011198

3300011198: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 7 - S13.1.40.a - transect 1, age 29 years, surface depth)



Overview

Basic Information
IMG/M Taxon OID3300011198 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121480 | Gp0155460 | Ga0137472
Sample NameArctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 7 - S13.1.40.a - transect 1, age 29 years, surface depth)
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Bristol
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size13376228
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetagenomes Of Arctic Soils
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → glacial feature → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationNorway: Midre Lovenbreen, Svalbard
CoordinatesLat. (o)79.1525Long. (o)12.21555556Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000265Metagenome / Metatranscriptome1420Y
F000835Metagenome869Y
F004025Metagenome / Metatranscriptome456Y
F005545Metagenome / Metatranscriptome397Y
F008643Metagenome330Y
F012561Metagenome279Y
F013424Metagenome / Metatranscriptome271Y
F014483Metagenome262Y
F017363Metagenome / Metatranscriptome241Y
F035205Metagenome172Y
F045796Metagenome / Metatranscriptome152Y
F049861Metagenome146Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0137472_100010All Organisms → cellular organisms → Bacteria → Acidobacteria6206Open in IMG/M
Ga0137472_100161All Organisms → cellular organisms → Bacteria → Acidobacteria3249Open in IMG/M
Ga0137472_100199All Organisms → cellular organisms → Bacteria3068Open in IMG/M
Ga0137472_100544All Organisms → cellular organisms → Bacteria → Acidobacteria2216Open in IMG/M
Ga0137472_100578All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia2172Open in IMG/M
Ga0137472_100753All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1949Open in IMG/M
Ga0137472_101029All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1680Open in IMG/M
Ga0137472_101889All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1215Open in IMG/M
Ga0137472_102073All Organisms → cellular organisms → Bacteria → Acidobacteria1157Open in IMG/M
Ga0137472_102663All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium996Open in IMG/M
Ga0137472_103710All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium785Open in IMG/M
Ga0137472_106382All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0137472_100010Ga0137472_1000103F004025MRKSILISLTLLLLCSVAAMGQPAQTVQPPQNLTFYYDYAVFPGKEAEFMKLVDTVGAPVRDKLMAEGVVLAWGVETPILRYPGGTTHLIWFSVANWAGVERVLNGMEAQLARLAAEEAKPFNARARKQSGGMTTAERQRAVFDMSKTRDWLIRDLVANYGPNPAPGVLPFIRYNFVKAKPGKGGDYRRTWEKYNKPIFDKLVADGVVVAFGLAAEDVKTDGEWTHFVWIATPTMAAADKIAPAFAADRAKRSEKERETMTEAFLDATEPDKARSIVTRSRIFKAAPQK*
Ga0137472_100161Ga0137472_1001612F000835MDELTKRVLGSFGHWGKDSLDLHTLFEAGGNDPDARTRVFDIVERLVKEGLLEEQGNDFYSLTDRGKGAIKLPV*
Ga0137472_100199Ga0137472_1001992F005545MTDSEDNSTNEVDDKGTSETEGRALLKRLCDDGFEGSDEKLAVALGRPVEEIEGWVKGTEPVDDDVVIKARGIAEQRGIVIE*
Ga0137472_100544Ga0137472_1005442F017363MNTLFAMRRANGDWFALDDDGLFRVPVFRSSGAAMVARSRDSGMECFRPVSLDETAFRNLTTTDEGKACFWLVDDPLMNPNRGRALDKNGLEQLMSKGAARVLNTEVIR*
Ga0137472_100578Ga0137472_1005781F008643SIGGPQVLAQTASSSPSQEEKRTDETNLDTQLYLLVATNQEVDDGKLPAALDPVVKQLRTSLPFKNYKLMTTLVNRVKNEGRLSLKWIGGPLLASAAASANTPSFNEFRVNSVKLVTDDGGRQVVRMDGFVFGARIPIVTGTAIASNGPAAPIINYENTGLNTDISIREGEAVVVGTLNVGPSGDAIILVMSAKRANK*
Ga0137472_100753Ga0137472_1007533F045796MTLSINLQKLALSVFGALVASSLFISAAVGPVSVI*
Ga0137472_101029Ga0137472_1010292F000265LKIQTVNKGKVNMPELRGVQATEDVKAEWARAYEIYLSAPGDRYDKKNDRTARIDSVAKELQLTRKQAKRRVRNFEAWQRNISKKLVSP*
Ga0137472_101889Ga0137472_1018892F035205VKFGLTWSQRRAFALSVLGFQVMVWADVLLNDGRFGGSWRTALVGVGLLGMAAATWWIGTSATRRGLVIHALPSMTIPWEDVHEIEVDISLGISTVVVHHGKSRKTRLAAPTTGPMGRDADFQEKVRVLRTFWAANRTSHQAA*
Ga0137472_102073Ga0137472_1020731F012561MTASLIYLIDNTIDGQGASPRELRAALTRMHEGLEILTEPYHAVSLERLEAVRPSHIVLSGQSHPWDQYAPASLDGVVDVIRK
Ga0137472_102663Ga0137472_1026632F014483MKASSVKSFSKKLSCPSSSLLLSFRIQVLAPEINFLVRHHLAGCDFCYCELSLLALYAAPLKGECRTPDLPINLRILAESILGHVKSEKVVGENS
Ga0137472_103710Ga0137472_1037102F013424MAQGSGKAPKQITWIICLVLYVVALLAHFAVVKVGGDIAAWSWIIGFGLLLAAVQVKGL*
Ga0137472_106382Ga0137472_1063821F049861EEKSFRPIFLDVEDSPELLKVISTYNDMFGRLFETLERSVGEDQARDIFMTILQNAETDELWAGVFFDQFGRFDENMLIANISELPFEKRKAVLDEGLNTLLSVQLFEVSQHLDQAGKVDVFRFISDQKASLEKATA*
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