Sample 3300011277

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300011277

3300011277: Marine microbial communities from the Southern Atlantic ocean - KN S14 170_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information
IMG/M Taxon OID	3300011277 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0125883 \| Ga0138374
Sample Name	Marine microbial communities from the Southern Atlantic ocean - KN S14 170_A metaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	15631998
Sequencing Scaffolds	13
Novel Protein Genes	14
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic Ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003733	Metagenome / Metatranscriptome	471	Y
F027996	Metagenome / Metatranscriptome	193	Y
F030135	Metagenome / Metatranscriptome	186	Y
F042932	Metagenome / Metatranscriptome	157	N
F050311	Metagenome / Metatranscriptome	145	Y
F055787	Metagenome / Metatranscriptome	138	Y
F063612	Metatranscriptome	129	Y
F099438	Metagenome / Metatranscriptome	103	N
F103410	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0138374_101951	Not Available	543	Open in IMG/M
Ga0138374_102688	Not Available	592	Open in IMG/M
Ga0138374_104551	Not Available	507	Open in IMG/M
Ga0138374_110587	Not Available	534	Open in IMG/M
Ga0138374_113207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	547	Open in IMG/M
Ga0138374_114978	Not Available	618	Open in IMG/M
Ga0138374_115781	Not Available	754	Open in IMG/M
Ga0138374_117153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	890	Open in IMG/M
Ga0138374_119811	Not Available	829	Open in IMG/M
Ga0138374_122930	Not Available	968	Open in IMG/M
Ga0138374_125918	Not Available	916	Open in IMG/M
Ga0138374_126714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	703	Open in IMG/M
Ga0138374_127999	Not Available	952	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138374_101951	Ga0138374_1019511	F030135	TLSSFTDIWHSTFAGCQFPDAILPGKEAIDLVAGPLN*
Ga0138374_102688	Ga0138374_1026881	F063612	LMSVAGGSPEDNVTSVTAKPGLKIPRRETSSKEGVNLLVL*
Ga0138374_104551	Ga0138374_1045511	F027996	VNVEEAKYNWAISSAITATFGSQAEPYGIAWGSHRPSGNSFVSAPRDHSISDGVGVSTSTYGVGVNAFYGGDREDDAGESAAYWAARVSYGISQFGINSTVGLSVNSNDAQLIDVSTEGSALGIPYESSIEYDLANDGAYWLRGVVTPDFAKGAYGLIGYNSDEEVTYD
Ga0138374_110587	Ga0138374_1105871	F099438	MKKFSIISRSIASFLAVIMFMTPVSSVFAQKAVDKREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPAVRLMDLEKAYGKGNSEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDDF
Ga0138374_113207	Ga0138374_1132071	F050311	KNIMKALRTRICTYAIALLASIGFATSTFAGSSDFSGIFIAGHAELNVVAIDGSATSGEDTGAAGTGASDNAETAQGTIGGFAPTAGYEIGFNMPLGDTFFITVGYADGGGKSAAIAKVDDANGTTDVSLHASNPDWWYIAPSISIFDNSAVYVKIGEAQANLKAIGDVTGSPGDITGDMYG
Ga0138374_114978	Ga0138374_1149781	F042932	EQVVDQEITKSDEEEQDSYENTVAKSIDTLADVVQSIAESQSGVEKAITEMHQRVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGNQVGLDSDRKNKNPPKKDPSGLKMQEKPVNKALEDEPEEAVVEKSEPEMVMKSQHEFSTETPRPGSAVETLDKSFTKDFSPILKDARANGYEGLSIVAQNILSGKYYKPTPEEI
Ga0138374_115781	Ga0138374_1157811	F063612	LAWSALMSVVGGSPADKVTSVAGEAGLKIPGRETSSKEGVNLLVL*
Ga0138374_117153	Ga0138374_1171531	F003733	MKALRTKVCTYAIALLASIGFATPTLAGSSDFSGIFIAGHAELNVVAIDGSSRTGAGNNGTVAGTGGSDDYEVTQGTIGGFAPTAGYEVGFNMPVGDTFFVTVGYADGGGESAAIAKSKSSDAAGTATTVTLHASNPSWWYIAPSISVFDNSAVYVKIGRADASLKAVGNVTGAPGDITGDMWGIGTTSIADSGLFFKTEAGAIQYDQFKITGIGGKSNVVVEGDPLVGYGHVAIG
Ga0138374_118963	Ga0138374_1189631	F103410	SHKSPQTRRSAATCILAQPIPTQPRASPFDALISLPAQHVLGRTPEGTSRTVLTDQIGLPKVSRPPQRRTFLHHPEASLEHASFRLPYHKTAQRLFSNTADHFCQHLRRHARVPDPGPTHRHSDDPKITFLPISLAFDRLARGPHGPGHTTPEGFACRFGCSTAPLLPGGIATTVSQPSHSTQKPLGHSTLCRTIRP*
Ga0138374_119811	Ga0138374_1198111	F063612	LRSVAGGSPADGAASVAEKSGLKTSRREMTSKEGVYSSAL*
Ga0138374_122930	Ga0138374_1229301	F063612	ALKSVAGGSPADEAALVAEESGLKTPRRGATSKEDVYSLAL*
Ga0138374_125918	Ga0138374_1259181	F055787	QKSEHTFSTETPRPSAALETVEKSGKDFSPILKDARSNGFDGLSQVARDILNGKYYKPTPEEVGMW*
Ga0138374_126714	Ga0138374_1267142	F003733	MKALRTKICTYAIALLGCIGFASPSLAGSSDFAGIFIAGHAEMNVVAIPGTHTAGATGTDASGGTENVEVTNGTIGAMTPTAGFEVGFNLPLGDVFFVTMGYADGGGKKAALAKVRDQNNSSDVSVLASNPDWFYIAPSISIFDNSAVYVKYGRSHVNLEAVGDVTGTLSGIDGDMWGIGTTSIAAND
Ga0138374_127999	Ga0138374_1279991	F063612	AKERRQGSPGDNVTSVAAEPGLETPRRETASKEDVNSSVL*

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