NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011294

3300011294: Marine microbial communities from the Southern Atlantic ocean - KN S19 250_A metaT (Metagenome Metatranscriptome) (version 2)



Overview

Basic Information
IMG/M Taxon OID3300011294 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114292 | Gp0125911 | Ga0138394
Sample NameMarine microbial communities from the Southern Atlantic ocean - KN S19 250_A metaT (Metagenome Metatranscriptome) (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size45766441
Sequencing Scaffolds35
Novel Protein Genes39
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED1611
Not Available20
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin12
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Atlantic Ocean
CoordinatesLat. (o)-28.2362Long. (o)-38.4949Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003733Metagenome / Metatranscriptome471Y
F006550Metagenome / Metatranscriptome370N
F006551Metagenome / Metatranscriptome370Y
F014070Metagenome / Metatranscriptome266Y
F016881Metagenome / Metatranscriptome244Y
F021393Metagenome / Metatranscriptome219N
F024127Metagenome / Metatranscriptome207Y
F024325Metagenome / Metatranscriptome206Y
F025846Metagenome / Metatranscriptome200Y
F050311Metagenome / Metatranscriptome145Y
F053817Metagenome / Metatranscriptome140Y
F055787Metagenome / Metatranscriptome138Y
F060053Metagenome / Metatranscriptome133N
F062154Metagenome / Metatranscriptome131N
F062674Metagenome / Metatranscriptome130Y
F063612Metatranscriptome129Y
F065449Metatranscriptome127Y
F074966Metagenome / Metatranscriptome119Y
F076161Metagenome / Metatranscriptome118N
F084341Metagenome / Metatranscriptome112N
F086151Metagenome / Metatranscriptome111N
F088935Metagenome / Metatranscriptome109N
F098669Metagenome / Metatranscriptome103N
F099438Metagenome / Metatranscriptome103N
F103410Metagenome / Metatranscriptome101N
F105006Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0138394_1000363All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161543Open in IMG/M
Ga0138394_1001065Not Available578Open in IMG/M
Ga0138394_1008149Not Available577Open in IMG/M
Ga0138394_1013649Not Available660Open in IMG/M
Ga0138394_1022234All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium679Open in IMG/M
Ga0138394_1024517Not Available594Open in IMG/M
Ga0138394_1036206Not Available1037Open in IMG/M
Ga0138394_1037645All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1830Open in IMG/M
Ga0138394_1038032Not Available501Open in IMG/M
Ga0138394_1038444All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium565Open in IMG/M
Ga0138394_1038532Not Available577Open in IMG/M
Ga0138394_1042817All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium510Open in IMG/M
Ga0138394_1054042Not Available502Open in IMG/M
Ga0138394_1056760Not Available626Open in IMG/M
Ga0138394_1059439All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium879Open in IMG/M
Ga0138394_1063007All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium716Open in IMG/M
Ga0138394_1063389Not Available609Open in IMG/M
Ga0138394_1064616All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium533Open in IMG/M
Ga0138394_1069324All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium562Open in IMG/M
Ga0138394_1070403Not Available953Open in IMG/M
Ga0138394_1070831All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium566Open in IMG/M
Ga0138394_1075846All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1581Open in IMG/M
Ga0138394_1079151All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium516Open in IMG/M
Ga0138394_1079347Not Available1126Open in IMG/M
Ga0138394_1079606Not Available950Open in IMG/M
Ga0138394_1085246All Organisms → Viruses → Predicted Viral1593Open in IMG/M
Ga0138394_1088207All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium538Open in IMG/M
Ga0138394_1089916Not Available567Open in IMG/M
Ga0138394_1091405Not Available562Open in IMG/M
Ga0138394_1093709Not Available540Open in IMG/M
Ga0138394_1094030Not Available750Open in IMG/M
Ga0138394_1096777All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella566Open in IMG/M
Ga0138394_1097640Not Available538Open in IMG/M
Ga0138394_1100931Not Available630Open in IMG/M
Ga0138394_1101386Not Available516Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0138394_1000363Ga0138394_10003631F025846MQTVQMVVMKLTVLLHHVKTKVYGIVAMANVFQHHMYVMAQVNSVTQAGVLTVPMVQMKA
Ga0138394_1001065Ga0138394_10010651F006551ADVEKQAADASGAWTGTADFESLDRIVSTSAEEAATGGAQTGNYDPWAANATIDRDSGTAFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSDSGDATEIGRLFAFDTSDAEGYGYPRI
Ga0138394_1008149Ga0138394_10081491F105006MNKFTLLNSNGVARPGFYIEITEFPQGSQPGKAIYVDGRAEDDVINFRYNPQTELLDAWHVGSPESKFTMRPITVSGRVVGLDVQFSHIPDFTAHFALDLSTESEDIVYDILAPPVHLAEMNEVNF*
Ga0138394_1012404Ga0138394_10124041F103410RPKGLQSLIASLPGPSHKSPQTRRSAATCFLAQPIPTHPRASPFDDLISMPAQHVLGRTPEGTSRTVLTDQIGLPKVSRSPQRRTFLHPPEASLEHVSFRLPYHKTAQKLFSNTADHFCQHLRRHARVPDPGPAHRHSDDPKTTFLPTSLAFNRLVQGPRDPRHTTPKGFACRFGCSTAPCYPEVSQRPCLNLANRPKGLLAI*
Ga0138394_1013649Ga0138394_10136492F016881MAVIADKAWWKSKTIWCSVVAGAVGVLQAAGVVEAVPEVVWTLLAAFGLYGVRD
Ga0138394_1022234Ga0138394_10222342F050311MKALRTKICTYAIALLVSIGFATPTLAGSSDFAGIFIAGHAELNVVAIDGSSTTPGQGATVAGTGGSDNTETTQGTIGGFAPTAGYEIGFNMPLGDTFFVTIGYADGGGDSAAIAKVDDGAPTSGTDVSLHASNASWWYVAPAISIFDNSAVYFKLGQAKASLKAIGD
Ga0138394_1024517Ga0138394_10245172F060053MAFGLIPAGTITRETIISTRRIPVAASESITKGQVCELVSGYLKKSPTAATVDVNHFVALESVDNSGGSAGDLSAPVAVSGHYVTVVADGVIRPGARLQISASTAGQVITTGGGGNKQIGWYTGKEGGIIAKAAGTPFQETF
Ga0138394_1036206Ga0138394_10362061F021393GLLVQDTENSEQVEETITKSAEAEEVETSQRVSTEKAFHDSVKSSLETLTEVIQSVAETQKGVSDSIDTIDDRLKALETPSDLPLTPRGTAGGDDVGAKVTVPRDPYPQGTQAGLDDDRSGADKPASDKGGLKMQKKSDDTELIEKSEHSFTTETPRPNAAAETVEKSYQKDFSPILKDAREAGFEGLSSVAQNILSGKYYKPSDDEVRGF*
Ga0138394_1037645Ga0138394_10376452F076161MKSINFSSRRPKTGFRAFAEKPAVKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIAADPKERSNLISSPTNPDAPTGKPV*
Ga0138394_1038032Ga0138394_10380321F098669METATRSRKQKWRLKEAEGLGRKRRVEEAERRELHESDQGLDPGHGLNPGRKVRRIDQAMDGASLVELLKLPR
Ga0138394_1038444Ga0138394_10384441F003733IMKALRTKICTYAIALLTSIGFATSTLAGSSDFSGIWIAGHAEMNVVAIDGTHSETTSEYEVDAGTVGGFAPTAGYEVGFNLPLGPVFFVTVGFADTGGGSATIADFRDQKNAADVSLQASDPTWYYIAPSISIFDNSAIYFKFGEVQADLKAIGDVTGSPNNIDGDMWGIGTTSIANNGLFFKTEA
Ga0138394_1038532Ga0138394_10385321F086151LKVNIMEQIDWESVIIKVEGMLDGDSEVQAIPSDVVSLARMLVETGNNNEGTRESLTTSIKGMLKPYPGYPWKRGNQGILPAAARAVVDSACEEIRAAAHTFFTETSSYSQPLLRKHGKSKGSPVYVDADDYANSLAKKARKSATELFRDGEWDGSLAGLADCSEYDYTEEE*
Ga0138394_1042817Ga0138394_10428171F050311RKNIMKALRTKVCAYAIALLASIGFATPTLAGSSDFSGIFIAGHAELNVVAIDGSARTGRATTVAGTGGSDNIETTKGTIGGFAPTAGYELGFNLPLGDTFFVTVGYADGGGKSAAIAKVDDQNNTTNVSLHAKNPSWWYVAPAISIFDNSAVYFKLGQAKAQLTAIGDV
Ga0138394_1054042Ga0138394_10540421F024127GKGNHENNKISQMIYKLTPKKSQDVKTLIEANTKKAAICYFAALLHLTKDDLLKIFSIR*
Ga0138394_1056760Ga0138394_10567601F006551EETALGASTTGSYDPWAANATIDRDSSSTFDSTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVWLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSDSGDASEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFKSQ
Ga0138394_1057520Ga0138394_10575201F065449LKTKSRVQSEDAKDRVVALVQRIATEQGATELSMLASRIQAVSGADPFGKVKGMIQEMIEKLVAEAQKEASHKAFCDKEMSETKAKREDKEGEVDDLNTKIDKATARIAKLTEDVATLTSELAAIAKAQAKADQVRADEKAAWGEAKADFESGLEGVGMALQVLRDYYAEKDEGESFMQ
Ga0138394_1059439Ga0138394_10594392F050311MKALRTNICTYAIALLASIGFATSTFAGSSDFSGIWIAGHAELNVVAIDGSATTGQGTTVAGTGGSDDTETAQGTIGGFAPTAGYEIGFNVPLGDTFFVTVGFADGGGESAAIAKVDDGSPLSTTDVSLHASNPQWWYIAPSISIFDNSAVYVKLDELKLH*
Ga0138394_1063007Ga0138394_10630071F003733MKALRTNICTYAIALLVGIGFATPTLAGSSDFSGIFIAGHAELNVVAIDGTHTDNDGEITQGVAGGFAPTAGYELGFNLPLGDTFFVTLGYADGGGDSARIATAHDDDDANGANVTLHASSPHWWYIAPSISIFDNSAVYFKLGQASANLKAIGDVTGGPNNIDGDLWGIGTTSIANNGLFLKTEAGAIQYEQFKITGIGGSSSAVVEGNPLIGYGHVAIG
Ga0138394_1063389Ga0138394_10633891F021393DNSNEQVEATEVAKSDDAVQRVETEKSFQETVKSGFDTLTEVVQSIAESQKATQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPKDPYPQGVQAGLDDDRNGEGKPASDKGGLKMQKKSEDDTELIEKAEHTFSTETPRPSAALENVDKSIKDTSLILKDARAEGFEGLSNVARNILNGKYYVPSDDEVRGF*
Ga0138394_1064616Ga0138394_10646161F025846MTHGSVMDGQTAQMVVMKLTVLLHHVKTKVYLIVVMDSVSQHHLYVMAQVNSVTQVGLLTVLMAQMKA*
Ga0138394_1069324Ga0138394_10693241F050311MKALRTKLCTYAIALLASVGFATSTLAGSSDFSGIWIAGHAELNVVAIDGSATTGQGDTVAGTGGSDNIETAQGTIGGFAPTAGYEIGFNFPLGDTFFVTVGFADGGGESAAIARADDATGTTDVSLHASDPNWWYIAPSISIFDNSAVYFKFGQAQADLKAIGDVTGVPGNIDG
Ga0138394_1070403Ga0138394_10704031F063612KERRQGSPGDNVTSVAAEPGLETPRRETASKEDVNSSVL*
Ga0138394_1070831Ga0138394_10708311F003733GVWIAGHAELNVVAIDGTNTDGTGTDAGTVTSGTIGGFAPTAGYELGFNLPLGDTFFVTVGYADGGGASAQIAGAETSDDGNSDVTVHASSPSWYYIAPSISVFDNSAVYFKIGRAEANLKAIGDVTGTLSGINGDLWGIGTTSIANNGLFFKTEAGAIQYDQFKITGIGGSANAVLEGNPLVGYGHV
Ga0138394_1075846Ga0138394_10758461F076161LTPRNRRAEAHRFMKSINFSSRCPKTSFRAFAEKPAAKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIAAYPKERSNLHSSPTNLDAPTGKPV*
Ga0138394_1079151Ga0138394_10791511F050311LRTKICTYAIALLASVGFATPLIAGSSDFSGVWIAGHAELNVVAIDGTHTNANTVAGTNVETAADTIGGFAPTAGWEAGFNIPLGPVFFVTMGIADGGGDSAAIAKVRDANNKADVTLHASDPTWYYIAPSISIFDNSAVYVKFGQVQTDLKAVGDVTGTPGNIDGDMWGVG
Ga0138394_1079347Ga0138394_10793471F055787EHTFSTETPRPSAALENVDKSTGDFSPILKDARSNGFDGLSQVARDILNGKYYKPTPEEVGQW*
Ga0138394_1079606Ga0138394_10796061F063612RSVAEGSPADNATSVAAESGLKIPRREMASKEGVDSSVL*
Ga0138394_1085246Ga0138394_10852461F006550MQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYDSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEIAVPNLLISIDTVTKFTGMEKIDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQGAIAPWDTFVSATDRSTGDPTVDIGIASLNIEGTGVGGKLNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEAGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAETGRVITGAITP
Ga0138394_1085246Ga0138394_10852462F060053RRIPVKAATTITKGNVCELSSGYLINSPVAATVDVNHFVALETIDNSGGANGALTAPVAVSGHYVTVVADGAIQPGARVQVSGSTAGQVITTGGGGNKQIGWYTGKEGGVIDEDSSTPYQETFVDNGDFPPVACADGDIIEIYLGL*
Ga0138394_1088207Ga0138394_10882072F062154NGVKVLSVVNARPEPPVNSVANGVREPSVVNVRQEPPVNSVVNARPERLVNRAVNGVRAPSVVNARPKQAVSVDHSSVVAVVREDQVVFCGCSL*
Ga0138394_1089916Ga0138394_10899161F099438RQGGHLIMKKFSIINRSIASFLAVIMFMTPVSSVFAQKAVDNREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPAVRLMDLEKAYGKGNSEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDFTDEAIDFHLGLMGLEK
Ga0138394_1091405Ga0138394_10914051F024325MSGAWDIATATSIGTGTAKTQINGGNNLTKPTQAVNLVEVVPYISSSGAMTAGESLAVTLEIDSFSVDLLPKRIIVP
Ga0138394_1091405Ga0138394_10914052F074966GNPRINPAGVINKWTGIGIAGKIYSLVGKQMGLPEQATIGRIGTKLIYGGAVGGFFDPPSSQGRITTYAVTPNVMVQNRATTQRRNQQFRRNLNYVPPDSFDYSTGSAFR*
Ga0138394_1093709Ga0138394_10937091F014070MKTLITTAILCLGLFGIVRAEEAVTETANPAVSVSGEISTDITFGDATTFSTPYMGLTFSGDGWVVSTNLANDGVEIEEAKYSWSVVDGITLTFGSQAEPYGLAWGLHRPSDNWFASTPRDHNVTNGVGVGVEQYGVSADFFYG
Ga0138394_1094030Ga0138394_10940302F088935MTSIGGLDVAFGARMQVVRTNVMCLALASTGLANSTTVPKYILNTYKEALKGTVVEPDFLYIYEIADLDGSGFTTAAVANSLFNQDNSGDGTADVTALEVNGVLRMISQVPLAVNSAFAD
Ga0138394_1096777Ga0138394_10967771F053817ASQLIAFPEHSLVLKGEKMQEAKTMADYGVKDAGSLDFVLEATEDSVVTQLKDLLKSRDLTCDELGLLYCYKHGVSTNQALKTIGVEKTLRDFVGDRKEFVVENGKVSMVHDGTSLKPMSVAKELEAILRENGPTMEITALCGKFIQKFHVSVANIVQKRPLDFFQQEGAFAVLDGRHVCLKENESRE
Ga0138394_1097640Ga0138394_10976401F062674GKVHTIVTEVDRTLTAAETGAVVLVQAAAISITLPAAAAGLNFKIVLGVETTAGADLLCTAGDCFFGIVSLYGSDTADQTGVQQQITHATAIAAPGSYDTMDFVAATATLGGMAGDVINVVAVDDVAWLATCDLHTTANDPGTVAVIIAS*
Ga0138394_1100931Ga0138394_11009311F006551IVSSSAEEGVTGGSHAGLYDPWAANATIDRDSSTTFDSTVESASGTIGTNGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSNASDSSEIGRLFALDTSDAEGYGYPRIGIQIAIPTEYYEATRRTPAYPFVNNAFVEKGVYRTMGETVCR
Ga0138394_1101386Ga0138394_11013861F084341KHAFLDVGTKAYANRLEMDTGSKMQFVMPTSLMELKHVTVRGGGAEVHVSHEMVDHAVVGVPSHFPSQAKLKVAQHVWLKSNIIVSGRMRITLNHFAETVIGDDDHDANTDRPASKLIVRIMGRQTDVRLRKHAFLDVGTKAYANRLEMDTGSKMQFVMPTSLMELKHVTVR

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