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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300011366 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116274 | Gp0153826 | Ga0134118 |
| Sample Name | Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung A8 Metatranscriptome (Eukaryote Community Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 150885396 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1 | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 3 |
| Not Available | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Monosiga → Monosiga brevicollis | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Point Reyes National Seashore, California | |||||||
| Coordinates | Lat. (o) | 38.04 | Long. (o) | -122.5 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015287 | Metagenome / Metatranscriptome | 255 | Y |
| F032070 | Metagenome / Metatranscriptome | 181 | Y |
| F042676 | Metagenome / Metatranscriptome | 157 | N |
| F069540 | Metagenome / Metatranscriptome | 123 | Y |
| F098404 | Metagenome / Metatranscriptome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0134118_1077843 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1 | 918 | Open in IMG/M |
| Ga0134118_1130431 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 572 | Open in IMG/M |
| Ga0134118_1160620 | Not Available | 807 | Open in IMG/M |
| Ga0134118_1162928 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 618 | Open in IMG/M |
| Ga0134118_1165843 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 555 | Open in IMG/M |
| Ga0134118_1221112 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Monosiga → Monosiga brevicollis | 571 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0134118_1077843 | Ga0134118_10778431 | F032070 | GVDRDKGHNIGFFSFKMTFTANAKTTGVPDFGVIHIDPVETAKAFQTYLNTASKLTGVALDDISTTVITMPADPANVTLADLLKLGMKLFDAIVWITAGRPKSHPLQADPGMTKESISSLHDIARAVFYCYFMLLTQARYPVGRNTSDKPKIPNFLKTIMGMDKEQHHYVEMICSFEPQKFDPAWVKFVSFKDFGQETLSRFGLGLAGKRMFGPFSIYQPRPDIDENLLKAFRFARTVAKAPASWAVHPLTRDPNILTARGNLNKNLANLALEVFTKEDLEEMVKTRVLYAMPAHDPAHRQYLLWD |
| Ga0134118_1130431 | Ga0134118_11304311 | F042676 | MAQEYSIGGMITFPQLTASYGLISGVIGAASLINPHLCYDLVGQPSRWVPMLESSSGLYTLRLFGLQTVALAAISVHAACYIREPAKRQQLSNVLAALNIGNGLIAAWMYKEGILNPLGVSIHSGLSLALGLGFLIYGMREDRRSGELRE* |
| Ga0134118_1160620 | Ga0134118_11606201 | F015287 | LQSLNGVHFLKPLRTKPGWLAMRSIAVMIFCILGVSGEFIGERGHSWGVNNNQHLIIWGGFFTGGLIEFLALFNFLKEPFWTVIPPIGLCYVGIMLTVHEQLRVFWAYLHLGSGVVTFPAVFILMYLPIRAMANYRKKLENKEIKPNKSSGPMGCLCFWRGRTLEDLNPAYTDLSMYNTPWPAMVAFFLALESMIWFEMAFRMGWWSGERLPPEVPHAEHAFLAMLIGDVIMVLGIFGVTSFIARSIDKFLGNEYESALADIELGVLED |
| Ga0134118_1162928 | Ga0134118_11629281 | F042676 | NKTLSHTHKTHHKMAQQEYSIGGMITFPQLTASYGLISGVIGAASLINPHLCYDLVGQPSRWVPMLESSSGLYTLRLFGLQTVALAAVSLHAAFNIKETSKRQQLSNVLAALNLGNGLIAAWMYKEGILNPLGVSIHSGLSMALGLGFLVYGLREDRRTGAGEPARD* |
| Ga0134118_1165843 | Ga0134118_11658431 | F098404 | ETFESKGFVHIKHNGTLYFGEAWYHVSQPDGKALEAFAFGGAEHLNVYELQRFDKGKAFQVIHDEKKPICHTKPLTGKMPQLWDWVEKADYVRNFTTDGTKFDLWSYTTAGVTLEVAVPVGHPDILAFFGRRSANEDFGYYLEEYKNQKPHSTWFEIPRECHLGPK* |
| Ga0134118_1221112 | Ga0134118_12211121 | F069540 | GQTMLKTVSQSTKRDFDYYNTHHCSPHRITSLDGSEGRSAKRIRTLSYQPEVINENDHKMLDSDGVPDQWSTNWGVHAIDENKFLEWVPKRSRAKYQRASSLRDPVFSTEDVQHILTKAIEETKAILKKEYEQVLQERLNDQYENFVRFNQDHLHRKMEQSQFDYMS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |