NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011936

3300011936: Human oral microbial communities from Los Angeles, CA, USA - S01-06-R



Overview

Basic Information
IMG/M Taxon OID3300011936 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0113963 | Gp0134610 | Ga0119780
Sample NameHuman oral microbial communities from Los Angeles, CA, USA - S01-06-R
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Los Angeles
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size115238576
Sequencing Scaffolds6
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities From Los Angeles, Ca, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027205Metagenome195N
F030786Metagenome184N
F051212Metagenome144N
F051214Metagenome144N
F054111Metagenome140N
F063777Metagenome129N
F081456Metagenome114N
F085821Metagenome111N
F097525Metagenome104N
F101360Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119780_100007All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae235138Open in IMG/M
Ga0119780_100172All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes44661Open in IMG/M
Ga0119780_100177All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43677Open in IMG/M
Ga0119780_100274All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales31935Open in IMG/M
Ga0119780_100907All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales13270Open in IMG/M
Ga0119780_107167All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga2561Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119780_100007Ga0119780_100007143F051212MKKFFFIFVLYWLHSCNGTEKIIATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKSVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQVIDIKYSKLYNHLNLEK*
Ga0119780_100007Ga0119780_100007229F097525MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISVDKEKSTEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGKEPYQLTFSLDDKTLAMIIKELGEAVASFKKK*
Ga0119780_100007Ga0119780_10000758F063777LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNRAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE*
Ga0119780_100172Ga0119780_10017213F051214MPGKIVAHDTHLRIDTEFIDLKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWLA*
Ga0119780_100172Ga0119780_10017227F081456LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVTFFVKLVITAIGFLLCAMTVILYTISAE*
Ga0119780_100172Ga0119780_1001729F027205VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKK*
Ga0119780_100177Ga0119780_10017724F101360VSKENALRRAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPQVDGLQVGTVSVSAPQPRYQVVDENALVTWLEWNKPDAVHKVPAPWFVATAALEGFIKQTGEVPDGVEVVQGDPRISVRVSGAQEEAIRELISTGDISLIEIEGGDA*
Ga0119780_100274Ga0119780_10027424F054111MNKSLESITHEEFLKLTERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTSDRDLFLNILDKEILFLI*
Ga0119780_100907Ga0119780_10090715F030786MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQRISFDSQSAEYSKPQLFLLYRSLRVDC*
Ga0119780_107167Ga0119780_1071672F085821MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK*
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