Sample 3300011973

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300011973

3300011973: Human oral microbial communities from Los Angeles, CA, USA - S04-01-D

Overview

Basic Information
IMG/M Taxon OID	3300011973 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0113963 \| Gp0134613 \| Ga0119783
Sample Name	Human oral microbial communities from Los Angeles, CA, USA - S04-01-D
Sequencing Status	Permanent Draft
Sequencing Center	University of California, Los Angeles
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	119263836
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Oral Microbial Communities From Los Angeles, Ca, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	USA: Los Angeles
Coordinates	Lat. (^o)	34.0722	Long. (^o)	-118.4441	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046431	Metagenome	151	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0119783_1058393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	506	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119783_1058393	Ga0119783_10583931	F046431	KRISKIGITIILILSIIISYGSVIISMAAESELTLTPKSETNNIHLKWTGPQNSSYKVYQKKPGSSTFETIGLTDFSNNATDEEVKVLNVYPHSKNIGKLWEGSSAFQTLPMVNVTYLDGHTETIEKSALLKVWMEGRNSK*

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