NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011980

3300011980: Human oral microbial communities from Los Angeles, CA, USA - S01-01-D



Overview

Basic Information
IMG/M Taxon OID3300011980 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0113963 | Gp0134607 | Ga0119777
Sample NameHuman oral microbial communities from Los Angeles, CA, USA - S01-01-D
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Los Angeles
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size186196375
Sequencing Scaffolds21
Novel Protein Genes21
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium3
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 512701
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities From Los Angeles, Ca, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043990Metagenome155N
F046431Metagenome151Y
F046432Metagenome151Y
F047127Metagenome150N
F047508Metagenome149N
F049707Metagenome146N
F051211Metagenome144N
F058221Metagenome135N
F067847Metagenome125N
F071327Metagenome122N
F076191Metagenome118N
F081454Metagenome114N
F081456Metagenome114N
F084342Metagenome112N
F085821Metagenome111N
F095630Metagenome105N
F103431Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119777_1000019All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens202538Open in IMG/M
Ga0119777_1000025All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes178713Open in IMG/M
Ga0119777_1000316All Organisms → cellular organisms → Bacteria45690Open in IMG/M
Ga0119777_1000412All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium38499Open in IMG/M
Ga0119777_1000728All Organisms → cellular organisms → Bacteria23766Open in IMG/M
Ga0119777_1001357All Organisms → cellular organisms → Bacteria13844Open in IMG/M
Ga0119777_1001823Not Available10746Open in IMG/M
Ga0119777_1002290All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes8902Open in IMG/M
Ga0119777_1002369All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium8603Open in IMG/M
Ga0119777_1005724All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga3911Open in IMG/M
Ga0119777_1009318All Organisms → cellular organisms → Bacteria2630Open in IMG/M
Ga0119777_1010634All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2361Open in IMG/M
Ga0119777_1010695All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2351Open in IMG/M
Ga0119777_1012477All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae2080Open in IMG/M
Ga0119777_1014556All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1821Open in IMG/M
Ga0119777_1020662All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1359Open in IMG/M
Ga0119777_1033782All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes908Open in IMG/M
Ga0119777_1034685All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium889Open in IMG/M
Ga0119777_1050818All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 51270648Open in IMG/M
Ga0119777_1066588All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes519Open in IMG/M
Ga0119777_1068547All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119777_1000019Ga0119777_1000019133F103431MNKYSTTTLMIDLDALIVGMLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFNGAFGENIADCHAKDDKDKDTESKEEGFHVCIPEG*
Ga0119777_1000025Ga0119777_10000254F046431MKIFKKMTIVSILLIIMLTYTQTLVFAAESELTLTPKPESNNIHLKWTGPQNSSYRVYQKKPGSNNFETIGLTDFSREALDEEVKVLNIYPQESNADGRLWPTLNSSQVANIAKVLPKVQVTYLDGQTETIQKTALLKVWMEGRNSK*
Ga0119777_1000316Ga0119777_10003166F046431MYKLRKILVTIMLVIIVITYIQNLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSTFETIGITDFSNNATDEEVKVLNIYPTPDYNNTQLSSSYPMPNITVKYLDGQTETILKSAILKAWMEGRNSYRRINCDEL*
Ga0119777_1000412Ga0119777_10004122F046431MLTYTQILVFAAESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSSNFETIGLTDFSPEAIDEEVKVLNVYPHSKNVGRLWPGSTAFQSLPMVNVTYLDGRTETIEKSALLKVWMEGRNIK*
Ga0119777_1000728Ga0119777_100072823F095630MYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDKGFFILSDIILTAKTYGDTCYMDVELYNPAAPNVYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRRSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSRNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI*
Ga0119777_1001357Ga0119777_10013574F051211MRAKKAIRIFEKIRDLPYGTSGNDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHILKIRRQQYEGHVILRVFIDEFAYDVDPSIDIGLTPTLPIAHWDGTSNTATVASLKHLHVYRPHSLHERILSRLRRKLFRGNPKEFYIAIDKWLADTRAHHSS*
Ga0119777_1001823Ga0119777_100182312F076191MKIIAESPAEIALMWRIKALSDELVNQDNQCTNMPVWTILDNNKAGKDYGAAMYFTSKAAEQHIEENDHHYDNPTTCIRSAHNNQELKDVIHLLILAGGNEIPSNHYGILRDA*
Ga0119777_1002290Ga0119777_10022905F046432MSESRLGEVISKFQMPQDRYLIEQEGSFGRGEFFWVIKNQTTHQKYLLMNTYSHHGVESEVEFYREQGFDNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS*
Ga0119777_1002369Ga0119777_10023697F081454MKAFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMNEVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNINEETKKILIESIKRFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0119777_1005724Ga0119777_10057242F085821MDHIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYVVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANINKTLSIIRSGETIASGKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAEIQSHIALLKDLYKKVNKIK*
Ga0119777_1009318Ga0119777_10093181F043990MIKKLGIIFTFGIIILGIVVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKVIVLTYDQLDNSFTKLNKLPIKEDLPPNGIPRQFLNITNGYYKYVVDENDDRDFGILIVDTARKEICIYNQIF*
Ga0119777_1010634Ga0119777_10106342F071327MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGTISEVLRKTSFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLNLKIVIIALASALLFEYAYPWRLIFG*
Ga0119777_1010695Ga0119777_10106956F049707VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTIWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKEN*
Ga0119777_1012477Ga0119777_10124773F058221MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVLTNGVTEKYLGGIMDSGLAQNAYSLVDKFLLPSLEAGSAKLLSNALLKRVKPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0119777_1014556Ga0119777_10145562F047127MKKTFAFILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDSDIREILEKYNRK*
Ga0119777_1020662Ga0119777_10206621F046431MLVIIVITYIQNLVFAVESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGATQFETIGLTDFSNNAIDEEVKILNIYPVNNSKYSGIPNVNIQYLDGQTETVPKSALLKVWMEGRNSDRRV*
Ga0119777_1033782Ga0119777_10337821F081456YYILISLIFLIVFGAISFATWLVWLTNVTFFVKLVITAIGFLLCAMTVILYTISAE*
Ga0119777_1034685Ga0119777_10346852F046431CIKERKQMKIFKKITIVSILLIIMFTYTQILVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVFQKKPGATQFETIGLTDFSNTDEEVRVLNVYPVSIAEYNTPYVNVTYLDGTSEDIPKSALLKVWMEGRNSK*
Ga0119777_1050818Ga0119777_10508182F047508LGHRLVEGRVKYPYLRDIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYASCVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP*
Ga0119777_1066588Ga0119777_10665882F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDAKLK
Ga0119777_1068547Ga0119777_10685471F084342QCGAKLFLWGGYLAVPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*
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