NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300012087

3300012087: Attine ant fungus gardens microbial communities from Florida, USA - TSFL043 MetaG



Overview

Basic Information
IMG/M Taxon OID3300012087 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121619 | Gp0175768 | Ga0153959
Sample NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL043 MetaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size287798639
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Polyporaceae → Trametes → Trametes cinnabarina1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus5
Not Available2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_81
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus robur1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAttine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
TypeHost-Associated
TaxonomyHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Fungus → Fungus corpus

Location Information
LocationUSA: Florida, Wekiwa Springs
CoordinatesLat. (o)28.7083Long. (o)-81.4874Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000950Metagenome822Y
F002822Metagenome527Y
F004539Metagenome / Metatranscriptome433Y
F010514Metagenome302Y
F018337Metagenome / Metatranscriptome235Y
F031319Metagenome182Y
F042254Metagenome / Metatranscriptome158Y
F048691Metagenome147Y
F054481Metagenome139Y
F066318Metagenome126Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0153959_1000214All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes35540Open in IMG/M
Ga0153959_1000479All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes16038Open in IMG/M
Ga0153959_1002762All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Polyporaceae → Trametes → Trametes cinnabarina2466Open in IMG/M
Ga0153959_1066978All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus737Open in IMG/M
Ga0153959_1096766All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus649Open in IMG/M
Ga0153959_1097061Not Available648Open in IMG/M
Ga0153959_1117745All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8605Open in IMG/M
Ga0153959_1139254All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium568Open in IMG/M
Ga0153959_1158009All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus robur541Open in IMG/M
Ga0153959_1158014All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus541Open in IMG/M
Ga0153959_1162480All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus536Open in IMG/M
Ga0153959_1179120All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus516Open in IMG/M
Ga0153959_1182272Not Available512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0153959_1000214Ga0153959_100021440F054481MSAIDIYAITNSSDEEFPELLLLRHVDIELHPRGISRPLVGRNGIYLLGIHNCGAIRIYVSHNTTIPPTTEVLGPLESVSGLTISHRQFGTMVSFSYENHHRIQMATYDLASHPSHYRWLQLNILEISNNRTIVKDLAGLDDNAGRVVIRRSGADNRFLVMDII*
Ga0153959_1000479Ga0153959_10004794F000950MKLLEEDNDDSESPLEVVNVNSASIEKIPDPVPPSGKGKGTPKLDFFLGL*
Ga0153959_1000518Ga0153959_10005185F066318MQDLAEGMCILATKLDRLKEVPKSDELHLTIGEFPGMMEEVASFVEKWLESWLGVCSAA*
Ga0153959_1002583Ga0153959_10025834F048691MEDQYGLTPENYVYDMKTLSNKHYIQGMLFLILLFLKHRLRPFQAIVVTLMLYDFIYHIPQQVRLSIL*
Ga0153959_1002762Ga0153959_10027622F002822MEKTNTLSDEKDTLKETTYGNLKKTYKMQAKSCRSIFRVFQKQDNFSTELKPREGVMSQTSFGHNSTDTYTISTV*
Ga0153959_1066978Ga0153959_10669781F031319MSIWEGETLKAYSNRYWEMFNEIKGKYNDMAISTFKDGLPIEHDLRKSLTGKPITSVCQLMDQV*
Ga0153959_1096766Ga0153959_10967661F031319MYNELDENDDDVAISTFKSGLPTEHGLRKSLIGKLVANVHQLMDRIDKYKRVEED*
Ga0153959_1097061Ga0153959_10970611F010514VKRILVSNSVRTQPAQENFEKISIKIHKIKKYISGIIFSQNGKRL
Ga0153959_1117745Ga0153959_11177451F018337MRAGTLHTWITRHIAVRQRLERICTSYLLFLMVATTKHSLTEAARFAGLHPSLFAKLLHSHAQVAITTLESLSKTQARQFAKPLERVHGLPWKIVIIIDATLQ
Ga0153959_1139254Ga0153959_11392541F042254MRAWAFFSPRLDPVLDRGKGHKYPVVSPQMPAGRTIGQAVLDHNPHCQIDHTVRVVTARWRQIREVGAKVLATLRTVMLRIRDDKIPRTPEVEIAQVVQRPLRLLVSIG*
Ga0153959_1158009Ga0153959_11580092F031319MHDEETLKAYSNRYWETYNEMEENFDDVAIITFKNSLPVDHGLRKSLIGKPATSMRQLMDRIDKYKRVVEDQL*
Ga0153959_1158014Ga0153959_11580141F031319YAERYWEMFNEIDGNFDEVAIRIFKVGLPPEHGLKRSLIGKPVTSLRQLMDRVNKYKRIEDDQQ*
Ga0153959_1162480Ga0153959_11624801F031319MYNEIEGNYDDVALSTFKRGLSTNHDLRKSLTGKPVTSVRQLMDRIDKYKRVEEDQQM
Ga0153959_1179120Ga0153959_11791201F031319MFNEIEGDFGDIAINTFKLGLPAKHGLRKSLTGKPVTCVRPLMDMIDKYKRAEED*
Ga0153959_1182272Ga0153959_11822721F004539KFLGGFSRFCCREVPVVGSGFGVHTMHHFVLPKLRLVFSQRTCPIHFFRPKTKFLGGFARFCCREVPVVGSAFGVRTMHHFVLLKLRLVFSQRTYPIHFFRPKTKFLGGFARFCCREVPVVGSGFGAHTMHPLCFLSCVLFFRDEHAQSTS*
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