Sample 3300012097

3300012097: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ015 MetaG

Overview

Basic Information
IMG/M Taxon OID	3300012097 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121619 \| Gp0175741 \| Ga0153931
Sample Name	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ015 MetaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	56710290
Sequencing Scaffolds	35
Novel Protein Genes	44
Associated Families	27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	6
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	6
Not Available	19
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Phanerochaetaceae → Phanerodontia → Phanerodontia chrysosporium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
Type	Host-Associated
Taxonomy	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Fungus → Fungus corpus

Location Information
Location	USA: New Jersey, Wharton State Forest
Coordinates	Lat. (^o)	39.7095	Long. (^o)	-74.6639	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000488	Metagenome	1084	Y
F003922	Metagenome	461	Y
F005805	Metagenome	389	Y
F008285	Metagenome	335	Y
F008983	Metagenome	324	Y
F010439	Metagenome	303	Y
F012417	Metagenome	280	Y
F013487	Metagenome	270	Y
F022125	Metagenome	215	Y
F023015	Metagenome	211	Y
F023497	Metagenome	209	Y
F024689	Metagenome	204	Y
F027070	Metagenome	195	Y
F031724	Metagenome	181	Y
F048028	Metagenome	148	Y
F049334	Metagenome	146	Y
F050060	Metagenome	145	Y
F054481	Metagenome	139	Y
F061422	Metagenome	131	Y
F065291	Metagenome	127	Y
F070730	Metagenome	122	Y
F078055	Metagenome	116	Y
F079422	Metagenome	115	Y
F083492	Metagenome	112	Y
F088012	Metagenome	109	Y
F091122	Metagenome	107	Y
F102229	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0153931_100973	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	6382	Open in IMG/M
Ga0153931_101317	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus	5305	Open in IMG/M
Ga0153931_105727	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	1852	Open in IMG/M
Ga0153931_106071	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	1747	Open in IMG/M
Ga0153931_109934	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	1055	Open in IMG/M
Ga0153931_111907	Not Available	882	Open in IMG/M
Ga0153931_111934	Not Available	880	Open in IMG/M
Ga0153931_113208	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	796	Open in IMG/M
Ga0153931_114087	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	750	Open in IMG/M
Ga0153931_114617	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	727	Open in IMG/M
Ga0153931_115007	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	710	Open in IMG/M
Ga0153931_115842	Not Available	678	Open in IMG/M
Ga0153931_118183	Not Available	602	Open in IMG/M
Ga0153931_118528	Not Available	593	Open in IMG/M
Ga0153931_118536	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	592	Open in IMG/M
Ga0153931_118682	Not Available	588	Open in IMG/M
Ga0153931_119106	Not Available	577	Open in IMG/M
Ga0153931_119815	Not Available	560	Open in IMG/M
Ga0153931_119861	Not Available	559	Open in IMG/M
Ga0153931_120628	Not Available	543	Open in IMG/M
Ga0153931_120661	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	542	Open in IMG/M
Ga0153931_120839	Not Available	538	Open in IMG/M
Ga0153931_120924	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	536	Open in IMG/M
Ga0153931_121093	Not Available	533	Open in IMG/M
Ga0153931_121232	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Phanerochaetaceae → Phanerodontia → Phanerodontia chrysosporium	530	Open in IMG/M
Ga0153931_121289	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	528	Open in IMG/M
Ga0153931_121496	Not Available	525	Open in IMG/M
Ga0153931_121504	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	524	Open in IMG/M
Ga0153931_121628	Not Available	522	Open in IMG/M
Ga0153931_121810	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	518	Open in IMG/M
Ga0153931_122095	Not Available	513	Open in IMG/M
Ga0153931_122368	Not Available	507	Open in IMG/M
Ga0153931_122583	Not Available	504	Open in IMG/M
Ga0153931_122617	Not Available	503	Open in IMG/M
Ga0153931_122756	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0153931_100973	Ga0153931_1009731	F054481	PGAISCQTRSSECLKSAPTLSDDFQCKASLLPNDRLAMITMCAINIYAITNSSDEKFPELLLSYRVAVELHPRGISRPLVGHDGIFICICSREAKRTFISHNPTIPPTTEVLGPLKSSSGLETSYRQLGTMALFSFNNHHEVAMATYDLTSHLSHYRWLQLNILRISHNRAIVKDLAGLDDNVGRVVVRRSGSNNHFLVMDVI*
Ga0153931_101317	Ga0153931_1013172	F065291	LILNLLEVNCPLDESIDSSTMESLRFCHIESNKDTEVDILQDDRGTSSLGEEIYEEAR*
Ga0153931_105727	Ga0153931_1057271	F048028	EESHEAMKSLIESIRILAGQLDRLKKVPSSDELRQTLDEFPGMVGEVMHFLQEWLEKWTRTYEFM*
Ga0153931_106071	Ga0153931_1060713	F054481	MSAIDIYAITNSSDEEFPELLLLRHIAVELHPRGISRPLVGHDGIYFIGICGSEGKRIFISHNPTIPPTTDVLGPLDSSCGLESSHSQFGTMASFTYSLSQIGVATYDLISHFPHYRWLELSILSISIDGAIANDLAGLDDNVGRAVLICSGGNNHFLVM
Ga0153931_108828	Ga0153931_1088281	F023497	DRGRGGDRTCYVYGKWGHIAKNCWKRHKGRVVETLQESAKENGGQ*
Ga0153931_109755	Ga0153931_1097553	F048028	MKSLAESIRTLAGQLNRLKKVPNSDELWQIINEFPGMMIEVMDFIQEWL
Ga0153931_109934	Ga0153931_1099342	F008285	MGKADGLSRRPDWQEGVEKDNKDQKLIKPEWIRGVETIIEEGNLKERIRKVQKEDKKVVKAVKELKRAGIKTLKDEEWEIEDR*
Ga0153931_110639	Ga0153931_1106391	F088012	ENLAMNQADTMDTQADADMPEFAAFSPSGNMVATKSKRSHSIEVLDTTTGEVISRMNFADDMKIIFSPNEDQVAFWSGSRVSTCDILHPDNHVSLNPQLREDVQIWKVAFQTCNDLVICALYGDSGLLQVWHRQDPAGFECTYSSEIEIEDSYPCLAPDGLTVVIVPWSSSPKFYSWNHDTAQFHSIDFVDDQVYIRRLRYSPDGKLFACWSRDDSHIRVWDTRTGQLVSKFPTSWVDALALSPALIEHSPGDRFIALLSEFEDKNTMHLLDVYTGHLYARFLGPESADMAFIRDGTKLANYSPDFGLRIWAIADLTDEHWHSAHGY
Ga0153931_111489	Ga0153931_1114891	F024689	MAKLLYSWRRKRYERERERRWDKKWDQWKNSLGQGNLKGGPCYGSPEQEKVSHAFEHLVQNLKVYNG
Ga0153931_111907	Ga0153931_1119072	F070730	PIVYGSQGTIIIVDYSIKHLINVVLEKKRSSLMCILQHLYLSLILEHVFSTYAIFNKHIPILSTEIRKENSSGKVVESRHIYLSN*
Ga0153931_111934	Ga0153931_1119341	F000488	MPAIRNTKTLAKHLLLKKKSATEKSLLERIGMEPTLSTKLYDRLIEADPCWYKVDDFYFASCPLELYFCKTKKLLYIKKYKELLEPTLDHILPFFTKISKNKT*
Ga0153931_112170	Ga0153931_1121702	F005805	MIATLQQQVNTMLLQQQGSRVEVTKPQTFNGRMEEMNTFINTACLYIRMKMVEEAAVTQVAWVLSYV*
Ga0153931_113208	Ga0153931_1132081	F008285	MGKADSLSRRPDWQEGVEKNNKDRMLIRPEWVRGVETVIEEGDLRKRIKKVQEGDKRVVKAVEELKK
Ga0153931_114064	Ga0153931_1140641	F061422	ESEVESVEQLFTKIRNNFGEILEEERKIEQLRMIE*
Ga0153931_114087	Ga0153931_1140872	F003922	VSSRLASSNMYSVLHPEKLGNKRNSINTTERVRDVRRTIRPLREVWLKVGLEKLESHEGVAVKALLDSGATGLFMNT
Ga0153931_114090	Ga0153931_1140902	F005805	QQQVNTMLLQQQGSRVEVARPQVFSGKIEEVSAFVNTACLYIRMKMMEEVAAT*
Ga0153931_114617	Ga0153931_1146171	F008983	KALHLDKAQGTIFGLKAIGEKSKGKKDLDAMEINEIQKKEGKSL*
Ga0153931_115007	Ga0153931_1150071	F050060	KLLLAQGYDAILVVYDRFSKIVHFIAIMEKTSAEGLTKLF*
Ga0153931_115655	Ga0153931_1156551	F013487	MATYFVITFDNQSIQKSKVRQAAKDVVKSEVYPQ
Ga0153931_115842	Ga0153931_1158421	F102229	RVAIMARSCSSLVWGGRMLRGVPPVAVVVGETLVIAMVMVIFPHRRISGLLRLYL*
Ga0153931_117584	Ga0153931_1175841	F005805	TSPQTREKQLLAIIVTLQQQVNTMLLQQQRNRVEVARPQVFSGKIEEVSVFVNTAHLYIRIKMTEEIAAT*
Ga0153931_118183	Ga0153931_1181832	F078055	LIVNISRIQRYIGQVEGQKKEQPALVIVEGEEKWEVKRILNKW*
Ga0153931_118528	Ga0153931_1185282	F012417	LDELVKGESEIESAEQLFAKIRNDFGKTLEEERKIEQLRTIEQRGRTYDKYM*
Ga0153931_118536	Ga0153931_1185362	F008285	MGKADGLSRRLDWQEGVERDNKDQKLIKPEWIRGAEMMMQEEDLRERIKKAQEGDEKIVKAVEELKRA
Ga0153931_118682	Ga0153931_1186821	F003922	KLGNKFNCTNTTEKVRDVQHTLRLLREVWMKVGLEKLDNHKRVAVRVLLDSRATGLFMDMTFV*
Ga0153931_119106	Ga0153931_1191061	F083492	AHQGTSLLLKNYIDQVLNGAINHHNSALTTTYNRIVTLEAKVTHLWGELTRLPGGNIISKTKVLEPPTFAGSENKIHLYDWLSQIVLITNGHLLICELMI*
Ga0153931_119815	Ga0153931_1198151	F027070	LEVKEGIQKKEVGKNASTKNLGLCYRVEGGIYTKKGKGILTVQGGKEGGASICRRPAKERVHPLFQVTPNLTSTLCSKKEWHTENGVGLSTHKSVDDKEWVSLTPHCRHTGWGRKE
Ga0153931_119861	Ga0153931_1198611	F070730	QSCNSIVCSGQDTIIIVDCSIEHLVNIVLKKERSSLMHILQYLYLSLIPEYMLSTYAIFDKRIPIPSTEIRKGNSSSKVVKSHIYLSN
Ga0153931_120628	Ga0153931_1206281	F000488	AEHLSLKKESATEKSLLERIGMEPTPSTKLYDRLVKADPCWHKVNDFYFASCPPELHFCKTKKLLCIKEYKELLEPILDCISPFFTKMSENKTWAEDPQYDSP*
Ga0153931_120661	Ga0153931_1206611	F027070	STKNLGPCYRVKGRIYTKKGKDILTVQGEKGEGTGVCRRPAKKRIHLPFQVTSNITSTLRSKEGWHTENGAELSTHKLVDNKEWVSLIPHCRYTGWGRKEEGIYKARPEVGIQ*
Ga0153931_120839	Ga0153931_1208391	F000488	QAMPAIRNTKTLTECLLLKKESATKKSLLERIEMESTLSTKLYDRLVEADPCWYKVDDFYFASCPPELHFHKTKKLLCTKEYKELLEPTLDCISLFFTKISENKTWAEDPQYDSLWKWFN
Ga0153931_120924	Ga0153931_1209243	F049334	LKRAGIKALKDEEWEIKDGIVLKERRIYVPEGDLRREIIQLHHDTPVGGDGGR*
Ga0153931_121093	Ga0153931_1210931	F010439	MFKKNSIEFFLGLDYYLYYFTVAVLLLVHNHMFFQNVLWSLD
Ga0153931_121232	Ga0153931_1212322	F008285	MLKHVPGKSMGKADGLSRRPDWQEGVERDNKDQKLIKPEWIRGVETLIEEENLRERIRKAQEGDEKIVEAIKGLKGAGIKMLKMKNGESRTE*
Ga0153931_121289	Ga0153931_1212891	F079422	IEEVGIQKVLEVEKDVWKKGVRENTSVKDLGLCHRIERGVCTKKGKGILLVEGGKGGSTDICRGSVEERIHLTLQVTPNVTSTLCGKKGWHAENGTRLSTYKPVDNKKWVSLTSHHRYTGWSRKEEGVHKTRSEIGIQ*
Ga0153931_121496	Ga0153931_1214961	F083492	ILQNVYQSTTLTLKNYVDQVLNKAINYYNSILTIAYNKITNLEAEVVYLRRKLVRLPKGNIISKTKVPELPTFACSENKMHLYDWLS*
Ga0153931_121504	Ga0153931_1215041	F050060	QGYDAILVVCNRFSKMAHFIATIEKTLAKELAKLFWDHV*
Ga0153931_121628	Ga0153931_1216282	F091122	LEYITTYLPGESSENRMKLLERYSILYIQVSLAIECPEDQDQECRSRQLIKGYVIII*
Ga0153931_121810	Ga0153931_1218101	F031724	LAVLDLDKEFRVEADTLNYTAGEILPIECSDELWKP
Ga0153931_122095	Ga0153931_1220951	F023015	KQSVFTELSADQSVITKSPDTKLPISQELLNVIVCFNNHHEALLNALLSAINRSRGDKIPWRYKVLNVCT*
Ga0153931_122368	Ga0153931_1223682	F012417	LLDKLAKGESKVELVEQLFTKIKNDFGETLEEKRKIKQLRTIEQGGKTW*
Ga0153931_122583	Ga0153931_1225831	F091122	MTRAELLGEYSVYKYTPEYVTTHLPGEYSENRIKLLEVYFILYIQVPLATEHSKGQDQECKSRQLIKYYVIII*
Ga0153931_122617	Ga0153931_1226171	F022125	SVKKAGAQEILEVEESIWKKGVRKDASMKDLGPCHRIKEGIYAKKEESIFTIKRGKGGSTDICRRPVEKGIYPTLQVTPDIAGTLCGEKGWHTENGTRLSTHKPVDDKKWVPLTPYCRYIGWSRKEKGVYEVEFEMEIQ*
Ga0153931_122756	Ga0153931_1227561	F010439	MFKKNSMEFFLGLDYYLYYFIVAVLLLVHDHMFFQN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300012097: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ015 MetaG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences