NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300012099

3300012099: Attine ant fungus gardens microbial communities from Florida, USA - TSFL041 MetaG



Overview

Basic Information
IMG/M Taxon OID3300012099 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121619 | Gp0175766 | Ga0153957
Sample NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL041 MetaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size55272027
Sequencing Scaffolds26
Novel Protein Genes33
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available11
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena → Mycena chlorophos1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Strophariaceae → Galerina → Galerina marginata → Galerina marginata CBS 339.882
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAttine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
TypeHost-Associated
TaxonomyHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Fungus → Fungus corpus

Location Information
LocationUSA: Florida, Wekiwa Springs
CoordinatesLat. (o)28.7103Long. (o)-81.4846Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000488Metagenome1084Y
F000591Metagenome1003Y
F000977Metagenome815Y
F006011Metagenome383Y
F006493Metagenome371Y
F006731Metagenome365Y
F013968Metagenome266Y
F014093Metagenome265Y
F017427Metagenome240Y
F019065Metagenome231Y
F023765Metagenome208Y
F025893Metagenome199Y
F026754Metagenome196Y
F030624Metagenome184Y
F031319Metagenome182Y
F032889Metagenome178Y
F034423Metagenome174N
F037234Metagenome / Metatranscriptome168Y
F039420Metagenome163Y
F039421Metagenome163Y
F057804Metagenome135Y
F064280Metagenome128Y
F065291Metagenome127Y
F069539Metagenome123Y
F083489Metagenome112N
F100120Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0153957_100623Not Available10810Open in IMG/M
Ga0153957_101748All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea2354Open in IMG/M
Ga0153957_102268Not Available1601Open in IMG/M
Ga0153957_102803All Organisms → Viruses → Predicted Viral1253Open in IMG/M
Ga0153957_103339All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites1069Open in IMG/M
Ga0153957_103717Not Available979Open in IMG/M
Ga0153957_104212Not Available905Open in IMG/M
Ga0153957_104273All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes896Open in IMG/M
Ga0153957_105011All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena → Mycena chlorophos819Open in IMG/M
Ga0153957_105204All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae799Open in IMG/M
Ga0153957_105205Not Available799Open in IMG/M
Ga0153957_106010All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota742Open in IMG/M
Ga0153957_106273Not Available726Open in IMG/M
Ga0153957_106317All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Strophariaceae → Galerina → Galerina marginata → Galerina marginata CBS 339.88724Open in IMG/M
Ga0153957_106615All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens708Open in IMG/M
Ga0153957_106852All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae698Open in IMG/M
Ga0153957_107644All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites665Open in IMG/M
Ga0153957_107815All Organisms → cellular organisms → Eukaryota659Open in IMG/M
Ga0153957_109571Not Available607Open in IMG/M
Ga0153957_109577Not Available607Open in IMG/M
Ga0153957_111216Not Available572Open in IMG/M
Ga0153957_111635All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Strophariaceae → Galerina → Galerina marginata → Galerina marginata CBS 339.88564Open in IMG/M
Ga0153957_111736All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus562Open in IMG/M
Ga0153957_112218Not Available554Open in IMG/M
Ga0153957_115227Not Available511Open in IMG/M
Ga0153957_116238All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0153957_100623Ga0153957_1006234F065291LILNLLEANCPLDESIDSSTMETLRFRHSDSNCDTEADTSCGDRGATSLDEVIYEEAR*
Ga0153957_101748Ga0153957_1017482F013968VVKRREELCNVKGDNTSLEALGPARANQVSEKETSVFGRPLSNATKLVGMENTVLDSVELESSGNHLLNELAKGVEQDNRSKGLGSVVGWFARLRNNDRD*
Ga0153957_102268Ga0153957_1022681F037234YLKLDPLTSDLTFIRIIKVRTGYRCKDIRRINVS*
Ga0153957_102803Ga0153957_1028031F013968SKDCSKHTVIERREELCNVKGHHTSLEALGPARANQVSEKETSIFSRPLSDATKLVGMKDTVLESIKLESPGNHLLNELAKGVEQDNRSKGLGSVVGWFARLGDDDRD*
Ga0153957_103339Ga0153957_1033392F006011ERQEQDVTVVNHISSQAKPESREVRVDKSHNSRNVLRVLRDSDHLGPVRVNRSAHYLVSFQRDSRGSIADKIPGRFLDKENIIVVLLRLKKSINQRIVLANILRINA*
Ga0153957_103717Ga0153957_1037172F000488MPAIRNTKKSLVERLSLKQESVKDKSLLERIGMSPTLSTELYDKLVEADPCWHKVDNLYFSSCPPEVYFRKKKKLLHIKKYKELLEPTLDHISPFFTKMSENK
Ga0153957_104212Ga0153957_1042122F083489MLVYLNMQITPFPENPTPHDYTGLHGIEQLYLQSLGQLQLLFDPDIIVQLFFETLKGIIRLGRALDDKLSLELILELPNEFCGKLE*
Ga0153957_104273Ga0153957_1042732F069539VEEGNLRERIKMAQKEDERVVKAVEELKKAGVKMLRDEEWEIEDGVVLKERRIYIPEGELRGEVI*
Ga0153957_104319Ga0153957_1043192F100120MSLPADTPPAVADALGYLQHHLQELTERQNASEHTINATLVGLTAQL*
Ga0153957_105011Ga0153957_1050112F034423VKDCPHRLDVRILTAEQQEELIEDLMALKDVAAEEEVGSFPEEDFV*
Ga0153957_105204Ga0153957_1052041F006493LVVGGSFQSVDRVRFRIYREEVESELPLEVPPGWYGENAGVHFLTEDVLGPFGGTIILEERESPENFFLFVVELLQG*
Ga0153957_105205Ga0153957_1052052F006731MVLDSSMSKLWNNGDELLKKFIGGGPDGEIEMGAETQSGHGGLRLSMQARRRLEFAEELSE*
Ga0153957_105869Ga0153957_1058691F031319MHEGETLKAYSDRYWEVYNDLDDNHDNIAISTFKSGLPTEHGLRKSLTGKPVADVHQLMDRI
Ga0153957_106010Ga0153957_1060102F017427MHSLEGNFTGNDITSEIILFEVLSNRCSSTGGVGVVGRECPRAKAKSKKQCVDPESTSVRMGIGWR*
Ga0153957_106273Ga0153957_1062731F019065MDVCQLTAEQWEELIEDLLALKDVVPIEESCLPEEEEDFV*
Ga0153957_106273Ga0153957_1062732F039421VPRSPVNKFTVLTIEDPNTIDSELTDTLPPNPPLLALLCKPKWEKRLPKLLSISALDMRGTSLLLP
Ga0153957_106317Ga0153957_1063171F000591MKNVVEFRASDMSRSSGVFAMELHCEFWCGNFGSGLPGIVFTAISLPLDEVLESSLVPTTVEYLFYFPLRFSVDDYGRWVVLCFLACDRVVQSRSELYYVEHWMELLHSVWQS*
Ga0153957_106615Ga0153957_1066152F032889MLVSGFPSLDKIGDEDPDNNILSWADTTDSGNHQQAMVVAAILNNRDQYGDSDCEDTKTWKAHVPEWL
Ga0153957_106852Ga0153957_1068521F064280VTYVGDQGLKVVQIVVYCPTSLVVGGSFQSVDRVRFRIYREEVESELLLKVPPGWYGEDAGVRFLTEDVLGPFGGTTILEKRESPEDFFLLVAELLWG*
Ga0153957_107644Ga0153957_1076442F039420MGMSTLGVASTKKREKCMLRRKCSSSKTGSLDQLLEMEMNRNETCQSLNSPS
Ga0153957_107815Ga0153957_1078151F026754QILDSSQSSRDFNIEMTIKEKKKLRTVRDHILIGESGPIAFKNQAIVRPSIEWITVLSPIYSLFILLRKVFTIFSIDHTLGLGIVNTTWTMEHIFGDFCIKKWL*
Ga0153957_109571Ga0153957_1095711F006731VVLDSSASKPWNNGDELLKKFIGDSPDGEIEMGVETQSGHGGPRLSMEARRRLEFAEKLSE*
Ga0153957_109577Ga0153957_1095771F030624ASFSNNPPKLSLDRNSSPNGLGHSLTLGVNSSLRVIGVGFQLYGQLKKSLHDVMGVLGSSAVSTASQTTRLGKGSSVMTRDERAS*
Ga0153957_109677Ga0153957_1096771F025893PHHLNVCQLTTEQQKELIEDLLALKDAVPIEESCPLEEEDFV*
Ga0153957_110051Ga0153957_1100511F025893MDVRQLTTEQREELIEDLLALKDAVPIEESCPPEEENFA*
Ga0153957_111216Ga0153957_1112162F014093MGKRQKNLGDRSWKKKRRNLVKNYQENLWLNYYMDGGEEDMKRKERRDGTKIGIDGKIPWDEES*
Ga0153957_111635Ga0153957_1116351F000591MKNVVELHASDVSRSSGVFAMELRCEFWCKDFGSGLPGVVFMAISFPLDEVLESSPVPTTVEYFLHLPLHFSVDDYGQWVVLCFASCNRVIRSWSKLHYIEHWMELLHPVW*
Ga0153957_111736Ga0153957_1117361F031319MYNELDENHDDVAISTFKNSLPTEHGLRKSLTGKPVANIHQLMDRIDKYKRVEEDQL*
Ga0153957_112218Ga0153957_1122181F000977IKSLSVTSDPITAGLSQEMDAPPDKDHIADARTYCHVFLDCIWSRRKPVQGSGNNGQE*
Ga0153957_113761Ga0153957_1137611F039420MGMSTLGVASTKKREKCMLGGKRSSPKTESLGQLLEIEINRNETCQSLN
Ga0153957_114665Ga0153957_1146651F057804LSGTEGGAAGEEQSTEKGVGRAGAEHAGVIVIDWSMDWNASFANHAWSILWAAAYQASGSVSAGCPKGIVAI*
Ga0153957_115227Ga0153957_1152271F023765ELCSLEKSGGKRSFGLVHCLNRTDGTGEGELTGGRDVGIGGEVTVGVGAVMS*
Ga0153957_116238Ga0153957_1162381F031319MSMREGETLKNYSDRYWEIFNEIEGEHDDVTISTLKTGLPTVHDLRKSLTGKPVTSVHQLMDRIDKYRRV*
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