Sample 3300012158

Basic Information
IMG/M Taxon OID	3300012158 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121619 \| Gp0175755 \| Ga0153946
Sample Name	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ030 MetaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	204799338
Sequencing Scaffolds	52
Novel Protein Genes	62
Associated Families	35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	6
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	8
Not Available	31
All Organisms → cellular organisms → Eukaryota	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem Assignment (GOLD)
Name	Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
Type	Host-Associated
Taxonomy	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Fungus → Fungus corpus

Location Information
Location	USA: New Jersey, Wharton State Forest
Coordinates	Lat. (^o)	39.7126	Long. (^o)	-74.5635	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000488	Metagenome	1084	Y
F000950	Metagenome	822	Y
F003922	Metagenome	461	Y
F005805	Metagenome	389	Y
F008285	Metagenome	335	Y
F008928	Metagenome	325	Y
F008983	Metagenome	324	Y
F010439	Metagenome	303	Y
F012417	Metagenome	280	Y
F013487	Metagenome	270	Y
F022125	Metagenome	215	Y
F023015	Metagenome	211	Y
F023497	Metagenome	209	Y
F024689	Metagenome	204	Y
F027070	Metagenome	195	Y
F029617	Metagenome	187	Y
F031724	Metagenome	181	Y
F035581	Metagenome	171	Y
F035582	Metagenome	171	Y
F035583	Metagenome	171	Y
F048028	Metagenome	148	Y
F049334	Metagenome	146	Y
F050060	Metagenome	145	Y
F058580	Metagenome	134	Y
F061422	Metagenome	131	Y
F065290	Metagenome	127	Y
F065291	Metagenome	127	Y
F066318	Metagenome	126	Y
F078055	Metagenome	116	Y
F079422	Metagenome	115	Y
F081966	Metagenome	113	Y
F083492	Metagenome	112	Y
F091122	Metagenome	107	Y
F091124	Metagenome	107	Y
F104171	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0153946_1014096	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	2122	Open in IMG/M
Ga0153946_1014181	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	2113	Open in IMG/M
Ga0153946_1016235	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	1906	Open in IMG/M
Ga0153946_1021560	Not Available	1537	Open in IMG/M
Ga0153946_1024924	Not Available	1377	Open in IMG/M
Ga0153946_1027854	All Organisms → cellular organisms → Eukaryota	1264	Open in IMG/M
Ga0153946_1031147	All Organisms → Viruses → Predicted Viral	1160	Open in IMG/M
Ga0153946_1033105	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	1106	Open in IMG/M
Ga0153946_1033781	Not Available	1090	Open in IMG/M
Ga0153946_1037716	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	999	Open in IMG/M
Ga0153946_1038214	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	989	Open in IMG/M
Ga0153946_1040954	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	937	Open in IMG/M
Ga0153946_1041755	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	923	Open in IMG/M
Ga0153946_1042921	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	903	Open in IMG/M
Ga0153946_1044073	Not Available	885	Open in IMG/M
Ga0153946_1047874	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	830	Open in IMG/M
Ga0153946_1049771	Not Available	805	Open in IMG/M
Ga0153946_1050300	Not Available	798	Open in IMG/M
Ga0153946_1050818	All Organisms → cellular organisms → Eukaryota	792	Open in IMG/M
Ga0153946_1051557	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	784	Open in IMG/M
Ga0153946_1053517	Not Available	760	Open in IMG/M
Ga0153946_1054477	Not Available	750	Open in IMG/M
Ga0153946_1054599	Not Available	749	Open in IMG/M
Ga0153946_1054998	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	744	Open in IMG/M
Ga0153946_1057939	Not Available	716	Open in IMG/M
Ga0153946_1058258	Not Available	713	Open in IMG/M
Ga0153946_1059531	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	701	Open in IMG/M
Ga0153946_1061921	Not Available	681	Open in IMG/M
Ga0153946_1063585	Not Available	666	Open in IMG/M
Ga0153946_1066306	Not Available	645	Open in IMG/M
Ga0153946_1066330	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	645	Open in IMG/M
Ga0153946_1067844	Not Available	633	Open in IMG/M
Ga0153946_1069522	Not Available	621	Open in IMG/M
Ga0153946_1069845	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	619	Open in IMG/M
Ga0153946_1071930	Not Available	605	Open in IMG/M
Ga0153946_1072473	Not Available	602	Open in IMG/M
Ga0153946_1073310	Not Available	597	Open in IMG/M
Ga0153946_1073425	Not Available	596	Open in IMG/M
Ga0153946_1074421	All Organisms → cellular organisms → Eukaryota → Opisthokonta	590	Open in IMG/M
Ga0153946_1075016	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	587	Open in IMG/M
Ga0153946_1077007	Not Available	575	Open in IMG/M
Ga0153946_1077452	Not Available	572	Open in IMG/M
Ga0153946_1077764	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	570	Open in IMG/M
Ga0153946_1078554	Not Available	566	Open in IMG/M
Ga0153946_1078796	Not Available	565	Open in IMG/M
Ga0153946_1080262	Not Available	557	Open in IMG/M
Ga0153946_1084122	Not Available	538	Open in IMG/M
Ga0153946_1084145	Not Available	538	Open in IMG/M
Ga0153946_1087147	Not Available	524	Open in IMG/M
Ga0153946_1087693	Not Available	521	Open in IMG/M
Ga0153946_1091300	Not Available	506	Open in IMG/M
Ga0153946_1092168	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0153946_1007008	Ga0153946_10070085	F024689	LPREFTAKLLYSWGKKRYKRKREKRWDKNWNQWKNSSGQGNLKGGPCYKSPKKGIVSQVFEYLI*
Ga0153946_1007590	Ga0153946_10075904	F048028	MKSLAESIRTLAGQLNRLKKVPNSDELWQIINEFPGMMIEVMDFIQEWLEHWT
Ga0153946_1014096	Ga0153946_10140964	F035583	MGKDQYYVQTLRTLYLHGILLSQVLFIAKRSALKRASQLSLKQTIMLSGSQDIGDLVSGDLVITN*
Ga0153946_1014181	Ga0153946_10141811	F066318	MQDLAKGMRTLAGQLARLEEVPKSDELHATIGEFPGMMEEVVNFIEKWLESWTGAYLAV*
Ga0153946_1016235	Ga0153946_10162354	F012417	LLDKLAKGESKVELVEQLFTKIKNDFGETLEEKRKIKQLRTIEQGGRTYDRYV*
Ga0153946_1021560	Ga0153946_10215601	F010439	KNSIGFFVRLDYYLYYFTVAVLLLAYNYMFFQNIL*
Ga0153946_1024924	Ga0153946_10249244	F010439	MFKKNSIEFFLGLDYYLYYFTVAILLLVHGHMIFQNVLWS
Ga0153946_1025207	Ga0153946_10252071	F065291	LCVTQVSRLILNLLEANCPLDESIDSSIVQSLRFRHSESTRDTEGDIWRGDRGTIEEIHEEAR*
Ga0153946_1027854	Ga0153946_10278541	F049334	LKDEEWEIEDRIVMKEGRIYMPEGDLRREIIRLHHDTPVGGHGER*
Ga0153946_1031147	Ga0153946_10311472	F091124	LVSEDDKRVSKNKSVEAARCRVNNGDQVLMLSIDSEYP*
Ga0153946_1033105	Ga0153946_10331051	F008983	YKVLYLNKTQGTIFGPEAIGEKSGEKKDPDAMEIDEI*
Ga0153946_1033781	Ga0153946_10337811	F061422	LLDKLAKKELEVKSVEQLFTKIRNNFGETSEEERKIEQLRTIK
Ga0153946_1037716	Ga0153946_10377161	F023015	KNVSKQSVFTKLSADQSVITKLLDTKLPISWELLNVIVCFNDHHKALFNILLSAINRSQDDKIP*
Ga0153946_1038214	Ga0153946_10382141	F049334	EGDEKVVKVVEELKRAGIKMLKDEEWEVEDGIVMKEGRIYVLEGELREEIIYLHYNTLVGGHRGR*
Ga0153946_1040954	Ga0153946_10409542	F027070	VEEGIQKKEVGESIRKKEVRKNTSTKNLRPYHRVEERIYTKKGKGVLTIQGGKGGGASICRRPAKERIYLPFQVTPNVTSTLRSKERWYMEDGTGLSTHKLVDDKEWVSLTPHCRYTGQGRKEEGVYKAGPEMGIQ*
Ga0153946_1041755	Ga0153946_10417554	F049334	VVEEIKKAGIKTLKDKEWEIEDRIVIKEGKIYMPEEELRGEIIQLYYNTPVGEHKGRWKITE
Ga0153946_1042921	Ga0153946_10429213	F050060	LADFITKLPLAQEYNAILIVCDCFSKIAHFIATTEKTSAEGLAKLF
Ga0153946_1044073	Ga0153946_10440731	F081966	VDGTVNAEGAIMHQVECNMFFKGHVERARMDVCNLEKIEMILEML*
Ga0153946_1044887	Ga0153946_10448872	F024689	LLYGWEKRRYKREREKRWDKNWSQWKNFSGQGNLKRGPCYESLKKEIVSYVFKHLIQNLELYNEVKV
Ga0153946_1047874	Ga0153946_10478741	F008928	SPPGPSKNKNQSFRAWLMKMLEENSDNPDSPPENVKINSMSIKEIPNPVPPSGKGKRTPKLDFSLGL*
Ga0153946_1049771	Ga0153946_10497711	F005805	QLLTMIATLQQQVNTMLLQQQGSRVEVARPQVFSRRMEEMSMSINTACLYIRMKMTEEAVAT*
Ga0153946_1050300	Ga0153946_10503002	F023497	MDIDRGRGGDRMCYVCGKWGYMAKNCWERHKRRVVEMLQE
Ga0153946_1050818	Ga0153946_10508181	F049334	RIRRVQKEDKKVVKAVKELKRAGMKTLKDEEWEIEDGLVMKEGRIYVPEGELRREIIRLYRDTLVGGHGGR*
Ga0153946_1051557	Ga0153946_10515571	F050060	SADFITKLPLAQGYDAILVVCDHFSKIVYFIVAIEKISVEGLAKLF*
Ga0153946_1053517	Ga0153946_10535173	F104171	LEEHSIDLLLQGCDHGEELLLSGLEGGQVLKGVSPVTVVVGEILVMVMVILMLMLMFPHRRMSGLLHLYL
Ga0153946_1054403	Ga0153946_10544032	F023497	IDVDRGRGEDKTYYVYRKWGHMAKNCWKRHRRRVVEIPQESAKENGEQ*
Ga0153946_1054477	Ga0153946_10544771	F031724	ALVALDLNKEFRVEADASNYATGEVLSMKCSDKL*
Ga0153946_1054599	Ga0153946_10545991	F000488	MPAIRNTKTLAEYLSLKKKSTTEKSLLERIGIEPTSSTKLYNRLVEADPCWHKVDNFYFASCLPELHFHKTKKLLYIKEYKELLEPTLDCISPFFTKMSENKTWTEDLQYDLLWK*
Ga0153946_1054998	Ga0153946_10549982	F008285	MGKADGLSRRPDWQEGVERDNKDQKLIKPEWIRGVETLMEEENLRERIRKAQEGDEKIVKAVE
Ga0153946_1057939	Ga0153946_10579391	F000488	MPTIKNTKTLAECLSLKKESVTEKLLLERIGMEPTPPTKLYDKLIEADPCWHKVDNFYFVSCLLELHFCKTKKLLYIKEYKELLEPTLDCISLFFTKMSENKTWTEDL
Ga0153946_1058258	Ga0153946_10582581	F035583	KDQCYVQTLRTLYLHGILLPLDLFMAKRSALKRASQWSLKQMIKLSSSRDISDLVSGDLVITD*
Ga0153946_1059531	Ga0153946_10595313	F012417	LDKLAKGESEVESAEQLFAKIKNDFGETLEEKRKIEQLRTIEQGGRICDKYV*
Ga0153946_1061921	Ga0153946_10619211	F013487	MATYFVIAFDNQSVQKSKVRQVAKDVVKSKVYPQT
Ga0153946_1063585	Ga0153946_10635853	F035582	MKVGLEKLENHKGVAVRALLDSRAIGLFMNMTFAREKGFKIEKLKKPLLVRN
Ga0153946_1066306	Ga0153946_10663062	F003922	LHPEKLGNKSNFTNTTERVRDIRYTLQLLREVWIKVGLEKLENYEGVAVRALLDSGAIGLFIDMTFA
Ga0153946_1066330	Ga0153946_10663302	F008285	MGKADGLSRRPDWQEGVEKDNEDRTLIWPEWVRGVEMVIEEGDLRKRIKKAQEGDKRVVKAVEELKKAGVKTLRD
Ga0153946_1067844	Ga0153946_10678441	F035581	MVLCLYKGTEVMLILANYNYVCWSARSSPSQMPTALLTTALIIGFNYHLKKRIPTLDSLLEVTVTPLHVPLT
Ga0153946_1068189	Ga0153946_10681891	F013487	MVTYFVIEFDNQRAQKREVRQVAKDIVKSEVYPQIYSP*
Ga0153946_1069522	Ga0153946_10695222	F012417	LDELAKRESEVELAEQLFTKIRNDFGETLEEERKIEQLRTIEQG
Ga0153946_1069845	Ga0153946_10698452	F058580	VFTTEYILAIPDINREMRVEADTSDYATGGVLSMK
Ga0153946_1071930	Ga0153946_10719301	F091122	VTRVELPGESSVYNYTPEYVTTHLTEESSENRIRLLEEYSILYIQVPLAMECSKGQGQECRSRQLIKYYVTII*
Ga0153946_1072473	Ga0153946_10724732	F012417	LLDELAKGELEVELVEQLFTKIKNDFGETLEEERKIEQLRTIEQGGR
Ga0153946_1073310	Ga0153946_10733103	F022125	VKESIWKKGVRKDAGTKDLGPCHRIKEGIYAKKGESILTIKRGKREGTDICGRPVEKGIHLTLQVTTDIASILCSEKGWYTENGTRLSTHKPVDTKKWVSFTPHCRHIGWSRKEKGVYKVGFE
Ga0153946_1073425	Ga0153946_10734251	F065291	LIFNLLEANCPLDESIDSSTLESLRFRHSESTRDTEADISRDDRGATSICEGINEEAR*
Ga0153946_1073457	Ga0153946_10734571	F029617	VLHQSGFGASAFPNRGGTVYSSVSRVPKMTTHRPTRYQVLIPLNAPITEIVMANAGSVVESCNRGLVEAHSKLRVELVHKAWDSVSMSTNFVALAAELEVIKQ*
Ga0153946_1074421	Ga0153946_10744211	F078055	YIGQVEGQRKEQPAPVIIKGEEKWEVERILNKWRI*
Ga0153946_1075016	Ga0153946_10750162	F008983	LIQAYKALHLDKTQGAIFGPEAIGEKSRGKKDPDA
Ga0153946_1076847	Ga0153946_10768471	F079422	VLEVEKGVWKKGVRKNASAKDLGPYHRIERGVYAKKEKGILIIKGGKGKSTGICGGSVEKRIHPTFQVTSNITGTLCGKKEWHAKNGTGLLIHKSVDNKEWVSFTPHCRHTG*
Ga0153946_1077007	Ga0153946_10770072	F083492	MLQNVYQGTSLLLKNYIDQVLNRAINHYNSALTTAYNRIATLEAKVTHLWEELTRLPGGNITSKTKVLELPTFAGSENKMYL
Ga0153946_1077452	Ga0153946_10774521	F005805	TTLQQQVNTILLQQQESRVEVVRPQVFSGKMEEMSMFVNMARLYIRMKMTEEVVATQVA*
Ga0153946_1077764	Ga0153946_10777641	F010439	KNSMEFFLGLDYYLYYFIVAVLLLVHDHMFFQNILWSLDLVM*
Ga0153946_1078554	Ga0153946_10785542	F012417	LLDELAKGESEVELVEQLFTKIRNDFGEILKEERKIEQLRTIEQGEKTYDEYV*
Ga0153946_1078796	Ga0153946_10787961	F013487	MATYFVIEFDNQRVQKSEVRQTAKDIVKSKVYP*
Ga0153946_1080262	Ga0153946_10802621	F065290	MLNRAINHYNGALTTTYNRIVTLETEVIRLWRKLTKLSGGNITSKTKVPEPPIFAGSENKMHVHDWLSQIALYCLASGIISEN
Ga0153946_1084122	Ga0153946_10841221	F078055	VNVSRIQRYIEQVEGQRKEQPAPVIIKGEEEWKVEKILNK*
Ga0153946_1084145	Ga0153946_10841451	F000488	TIRNTKTLAERLLLKKESATKKLLLERIEMKPTLSTKLYDRLVEADPCWYKVDDFYFVSCPPELHFHKTKKLLHIKEYKELLEPTLDRILPFFTKMSENKTWAEDLQYNLL*
Ga0153946_1086699	Ga0153946_10866991	F013487	MATYFVIGFDNQSTQKSKVRQAAKDVVKSEVYPQTYS
Ga0153946_1087147	Ga0153946_10871472	F081966	MVNTGGAIIHQIEYNMFFKGHVERARMDVCNLGKTE
Ga0153946_1087180	Ga0153946_10871801	F008983	MQVYKTLHLNKAQGAIFGPEAIKEKSGGKKNLDAMEIDKIQRKEGKSLQYC*
Ga0153946_1087693	Ga0153946_10876931	F035581	MVLRLCKGAEVILILANYNYICWGAKSLSSQVSTALLTTALIIGLDYHLKERIPTLDGLLEVTVTPLHILLTIEHSTRFLPRKQ*
Ga0153946_1091300	Ga0153946_10913001	F035582	LKVGLEKLESHEGIAVKALLDSGVTGLFMDTTFAKEKGFKMEKLKKPL
Ga0153946_1092168	Ga0153946_10921682	F000950	LLRAWLIKILEKDSDDPDSSSKDIKINSILIEEIPDPVPSSRKGKGMSKLDFLLGL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300012158: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ030 MetaG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences