NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300012662

3300012662: Baboon gut microbial communities from fecal samples in Kenya - F10



Overview

Basic Information
IMG/M Taxon OID3300012662 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118445 | Gp0134419 | Ga0116619
Sample NameBaboon gut microbial communities from fecal samples in Kenya - F10
Sequencing StatusPermanent Draft
Sequencing CenterDuke University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size145604265
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBaboon Gut Microbial Communities From Fecal Samples In Kenya
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut → Baboon Gut Microbial Communities From Fecal Samples In Kenya

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
Location
CoordinatesLat. (o)2.717Long. (o)37.1Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032286Metagenome / Metatranscriptome180Y
F036964Metagenome / Metatranscriptome169Y
F048702Metagenome / Metatranscriptome147Y
F052660Metagenome142N
F056682Metagenome137Y
F081354Metagenome114Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0116619_1001179All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales8139Open in IMG/M
Ga0116619_1021034All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1160Open in IMG/M
Ga0116619_1027968All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes959Open in IMG/M
Ga0116619_1033816All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales842Open in IMG/M
Ga0116619_1035703All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp.811Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0116619_1001179Ga0116619_10011791F081354VKHFSSIFPKSSCRSPLKKGAVTEIPLEYGKTEVQSLFEPLSTAISSMELPKNFENKKLPNTLA*
Ga0116619_1021034Ga0116619_10210343F052660MCILRILPENTPEKIGQERAGTEWTVVKSKIRLCIRNCSYGQFLYGGILMGIALPIPSHRAKSHDFVCWWPAAAGHSRSADALPGKSNY*
Ga0116619_1027968Ga0116619_10279682F032286MVKWACQIVTPVRRRALIFDVRLFAGNATDDTLVTGSAFRFCRLMCLCVKRRNIILNSKCRSLFDSALFRADNRTKQKTISPFSLALIFMFDFATLSERRSCPEDRSRRFVPVGTLTLSRSWRLLHWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENELKNADFHAYGQDRKRAEI*
Ga0116619_1033816Ga0116619_10338162F056682MKMQSRAGKVANQPIGQGKMYSASFSAFPSKNRITFPIQELRKIHENQEVL*
Ga0116619_1035703Ga0116619_10357032F036964MELLRIIFPIMMVIGALGSLVVNIIQKGDWPTSLQWLGAMLLYTALTFRNVRG*
Ga0116619_1049343Ga0116619_10493432F048702MKKFNKSVNKKSPEELREYLAFQRRASRVEPKKGKGSYDRKAFKKSGRDSGD*
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