NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300012894

3300012894: Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - L



Overview

Basic Information
IMG/M Taxon OID3300012894 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127370 | Gp0191375 | Ga0160427
Sample NameSolar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - L
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size773293537
Sequencing Scaffolds31
Novel Protein Genes33
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci1
All Organisms → cellular organisms → Bacteria11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus aquatilis1
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSolar Panel Surface Microbial Communities From Lawrence Berkeley National Laboratory, California, Usa
TypeEngineered
TaxonomyEngineered → Built Environment → Solar Panel → Unclassified → Unclassified → Solar Cell Surface → Solar Panel Surface Microbial Communities From Lawrence Berkeley National Laboratory, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Surface (non-saline)

Location Information
LocationUSA: Building 30, Lawrence Berkeley National Lab, Berkeley, California
CoordinatesLat. (o)37.876387Long. (o)-122.246777Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002238Metagenome / Metatranscriptome579Y
F005599Metagenome / Metatranscriptome395Y
F021064Metagenome / Metatranscriptome220Y
F037234Metagenome / Metatranscriptome168Y
F040969Metagenome160Y
F045048Metagenome / Metatranscriptome153Y
F050165Metagenome / Metatranscriptome145N
F059667Metagenome / Metatranscriptome133Y
F088701Metagenome / Metatranscriptome109N
F104247Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0160427_10000078All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci73714Open in IMG/M
Ga0160427_10000141All Organisms → cellular organisms → Bacteria50034Open in IMG/M
Ga0160427_10000230All Organisms → cellular organisms → Bacteria36784Open in IMG/M
Ga0160427_10000380All Organisms → cellular organisms → Bacteria27627Open in IMG/M
Ga0160427_10000403All Organisms → cellular organisms → Bacteria26663Open in IMG/M
Ga0160427_10000691All Organisms → cellular organisms → Bacteria20385Open in IMG/M
Ga0160427_10001052All Organisms → cellular organisms → Bacteria16925Open in IMG/M
Ga0160427_10001076All Organisms → cellular organisms → Bacteria16746Open in IMG/M
Ga0160427_10001317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus15260Open in IMG/M
Ga0160427_10003063All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus aquatilis9902Open in IMG/M
Ga0160427_10003675All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus8941Open in IMG/M
Ga0160427_10005167All Organisms → cellular organisms → Bacteria7384Open in IMG/M
Ga0160427_10006845All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus6291Open in IMG/M
Ga0160427_10008977All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus5369Open in IMG/M
Ga0160427_10014146All Organisms → cellular organisms → Bacteria4117Open in IMG/M
Ga0160427_10016559All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus3754Open in IMG/M
Ga0160427_10026384All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus2850Open in IMG/M
Ga0160427_10043025All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus2115Open in IMG/M
Ga0160427_10065481Not Available1632Open in IMG/M
Ga0160427_10089772All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae1341Open in IMG/M
Ga0160427_10098286Not Available1268Open in IMG/M
Ga0160427_10130044Not Available1064Open in IMG/M
Ga0160427_10161942Not Available929Open in IMG/M
Ga0160427_10191628All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi838Open in IMG/M
Ga0160427_10201286All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum813Open in IMG/M
Ga0160427_10223780All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina762Open in IMG/M
Ga0160427_10246506All Organisms → cellular organisms → Bacteria → Proteobacteria719Open in IMG/M
Ga0160427_10259322All Organisms → cellular organisms → Bacteria697Open in IMG/M
Ga0160427_10359815All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae574Open in IMG/M
Ga0160427_10379672All Organisms → cellular organisms → Bacteria556Open in IMG/M
Ga0160427_10408825All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea532Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0160427_10000078Ga0160427_1000007849F104247MHLCILEGMPSTPPALRLYPTEAAAKKAGLALADFRGERLTLVLYALLPEGEKPIYLLSSSIRLTVAEKRWVEEHRATVTKLGTYYPGRNFAPLQTNMVRKQKSAEQG*
Ga0160427_10000141Ga0160427_1000014121F104247MSASTHPLRLFPTEAAAKKAGLKLADLSGERLGTTLYALLPESEKKLVYLLSSSYRLTVAERSWVTERRATVTKLGRFQVGRSYSPLQLNMRREQKV*
Ga0160427_10000230Ga0160427_100002305F104247MPVSPIPLRLYPTEAAAKKAGLKLADFSGERLATTLYALLPAGEKKPTYLLSSTYRLTVAQKRWAEEHQATVTKLGRFPAGGNCMPLQTNMLRKKKTVD*
Ga0160427_10000380Ga0160427_1000038028F104247MPGTLPTLRLYPTEAAAKKAGLALADFRGERLTLVLYALLPEGEKPIYLLSSSIRLTVAEKRWVEEHQATVTKLGTFYPGRNFAPLQTNMVRKQKSAEQRWSWT*
Ga0160427_10000403Ga0160427_1000040319F104247MVKPPLPLRLYPTEAAAKKAGLQLADFSGARLCTTLYALLPAGEKKPTYLLSSTYRLTVAEKRWAEEHQATVTKLGRFPAGGNFMPLQTNMLRARNAKPEHGR*
Ga0160427_10000691Ga0160427_1000069111F104247MPVSPLPLRLYPTEAAAKKAGLKLADFSGERLATTLYALLPAGEKKPTYLLSCTYRLTVAEQRWAEEHQASVTKLGRFPVGGNYMPLQTNMLRKKKTAE*
Ga0160427_10001052Ga0160427_1000105215F104247LYPTEIAARKAGIALADFRGERLTLVMYALLPEGDKKPTYLLSSSMRLTVPEKRWVEEHRATVTKLGTFYPGRNFAPLQTNMVRDKKTVEQE*
Ga0160427_10001076Ga0160427_1000107614F104247MTIPPAPLRLYPTETAAKKAGLQLADFSGARLSTMLYALLPAGEKKPTYLLSSTYRLTVAEKRWVEEHQATVTKLGRFPAGGSFMPLQTNMLRTRNAKL*
Ga0160427_10001317Ga0160427_100013172F104247LFFTEAAAKKAGLALADFRGERLTMVLYVLLPEGEKKPTYLLSSSIRLTVAEKRWVEEHRATVTKLGTFHPGRNFAPLQTNMVRQKKPTE*
Ga0160427_10003063Ga0160427_100030636F104247MPSTPPILRLYSTEAAAKKAGLALADFRGERLTLVLYALLPEGEKPIYFLSSSIRLTLAEKRWVEEHQATVTKLGTFYPGRNFAPLQTNMVRKQKSVEQE*
Ga0160427_10003675Ga0160427_1000367514F104247MPVPPSPLRLYPTEVAARKAGLNLADFSGQRLATTLYAFLPAGEKKPIYLLSSTYRLTVAEQRWAEERQATVTKLGRFHVGGSFMPLQTNMLRKKKIAE*
Ga0160427_10005167Ga0160427_100051672F104247MLAGMPDPSHPLRLYPTEAAAKRAGLQLADFSGERLPTTLYALLSEGEKKSIYLLSSAYRLTVAEQHWVAEHRAAVTKLGRFHVGRGFSPLQLNMRREPRG*
Ga0160427_10006845Ga0160427_100068453F104247VTEAAAKKAGLKLADFSGERLATTLYALLPAGEKKSTYLLSSTYRLTVAEQRWAEEHQATVTKLGRFPVGGNYMPLQTNMLRTKKTPE*
Ga0160427_10008977Ga0160427_100089772F104247MAKPPLPLRLYPTEAAAKKAGLQLADFSGARLSTMLYALLPAGEKKPTYLLSSTYRLTVAEKRWAEEHQATVTKLGRFLAGGSFMPLQTNMLRTRNAKP*
Ga0160427_10014146Ga0160427_100141468F104247MHLCILEVMPSTPPALRLYPTEAAAKKAGLALADFRGERLTLVLYALLPKGEKPIYLLSSSIRLTVAEKRWVEEHRATVTKLGTFYPGRNFAPLQTNMVRRQKSAEQG*
Ga0160427_10014146Ga0160427_100141469F104247VAKKAGLKLADFSGERLATTLYALLPNGEKKPTYLLSCTYRLTVAEQRWAEEHEATVTKLGRFPVGGNYMPLQTNMLRKKKTLE*
Ga0160427_10016559Ga0160427_100165595F104247MISTPFPLRLYPTEAAARKAGLALADFRGERLTLVLYALLPKGETKPTYLLSSSIRLTVTEKRWVEERQAAVIKLGTFYPGRNFAPLQINMVRKQKSAEQG*
Ga0160427_10026384Ga0160427_100263843F104247MPSTPSPLRLYPTEAAAKKAGLALADFRGERLSTVLYALLPEGEKKATYLLSNSIRLTVAEKRWVEEHRATVTKLGTFHPGRNFAPLQTNMVRRKKPTGED*
Ga0160427_10043025Ga0160427_100430254F104247LYPTESAARKAGLALSDFRGERLTVVLYALLPGDDKKPTYLLSSSVRLTVPEKRWVEAHRATVTKLGTFYPGRSFAPLQTNMVRGQKSVAQE*
Ga0160427_10065481Ga0160427_100654814F088701VLKRPEKIPIPLFKNRKNKLSYAIKAEISKIVIVALEYKIDLSRLSVIELDKSKKINDVINT*
Ga0160427_10089772Ga0160427_100897721F104247MPVSPSPLRLYPTEAAAKKAGLKLADFSGERLATTLYALLPAEEKKPTYLLSSAYRLTVAAQRWAEEHQATVTKLGRFPVGGNYMPLQTNMLRKKKTVE*
Ga0160427_10098286Ga0160427_100982861F045048VFNRGNSKGFMASIPIGGHFAPNSIVGDKALWKKAQKIAKKNKASEIINKPAPIFIPRCTANV*
Ga0160427_10130044Ga0160427_101300445F037234MNKYLILDPKPSDLTMIRVIKARMVYRCKDIQRIVV
Ga0160427_10161942Ga0160427_101619422F040969MGEGMTRDRWLSLGLQADALAVFEAGGLQTVEAAGNGIVGVPRGGAGHHLLGTAPSREEAVVIATILRLFNPN*
Ga0160427_10191628Ga0160427_101916281F059667NTKCNAKNLFKVALFTEKPPQMNSTISCPNQGIALIRLVITVAPHKLICP*
Ga0160427_10201286Ga0160427_102012861F050165MNPTFERALWASTPALRCLAPLDAILVPALGLYWVKTLPASGGLVGAVLGVFCLWIGARRAYRALFEFEAYRWMTLRLAKLAIATWVVMVMVKLVWFIQGS*
Ga0160427_10223780Ga0160427_102237802F021064IPLDLLTSVIGNNNNIRIAENMAITPNNLLGIDLNIA*
Ga0160427_10246506Ga0160427_102465061F005599AVMCVKPEQASKVMMRMPTRLNNGEGSMSGEEIDECTRSIRRGNGHGTLEW*
Ga0160427_10259322Ga0160427_102593222F104247MPSTPFPLRLYPTESAARKAGLALADFRGERLTVVLYALLPEDDQKPTYLLSSSVRLTVPEKRWVEAHRATVTKLGTFYPGRSFAPLQTNMVRGQKPAAQE*
Ga0160427_10359815Ga0160427_103598151F002238MAKVKELTEFERGFQAGILAARHWHEAQSMQAMVQSRRTRFPKNLEREAEVHTRSAEMMNTLSPEDV*
Ga0160427_10379672Ga0160427_103796721F104247MLSPDNTHTEKMSVTPAPLRLYPTEAAARKAGLKLADFSGERPATTLYPFLPMGTKKPTYLLSSTYRLTVTERRWVDEYQATVTKLGRFPAGGNFMPL*
Ga0160427_10395182Ga0160427_103951822F021064AILLKGLNCIPLKLDKSVKGIVSRAKIAENIAITPNNLLGIDLNIA*
Ga0160427_10408825Ga0160427_104088251F045048VIVTPDPRSITVFKSGSSNALIASTPIGGHWAPSSTVGDNALWKYAQNIAKKKRISDTINRATPMFKPLCTARVWLPR*
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