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Sample 3300013047
3300013047: Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 5th pass 37_C BE-Lig BY (Metagenome Metatranscriptome)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300013047 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0127392 | Gp0191761 | Ga0164278 |
| Sample Name | Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 5th pass 37_C BE-Lig BY (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 37825163 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Eukaryota | 1 |
| Not Available | 2 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information |
| Location | USA: Emeryville, California |
| Coordinates | Lat. (o) | 37.83 | Long. (o) | -122.29 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F005470 | Metagenome / Metatranscriptome | 399 | Y |
| F028375 | Metagenome / Metatranscriptome | 191 | Y |
| F071833 | Metagenome / Metatranscriptome | 121 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0164278_125721 | Ga0164278_1257211 | F005470 | MSIKLRKEGQLITEFPNEMVPRSRLLTKLVEEFNSTEVDLEPAPGKDFSPATINKVKEFLQKFDKGLNKMPKKPLLIFVTYNDWLDNNFDEKLREWLEEFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTQYQDFFTPEEEAKFIEKEFINKNDFEGVAAEDEEELNKE* |
| Ga0164278_126818 | Ga0164278_1268181 | F028375 | MNLAQECKVWLNTYPKFNWRHTFDFLLSNESTKAVEFSDYGVACFVKGLQAELVHKDYTEAFSWYENGAIQLDSLCLFRLHEIYIGDTNFKVEYNEEQAMIHLLYSALLSQFEVFDQKVSFWQKFDSFWKKEALKTTYLQKLILDPPAYYLVPTGPLFSKLFAFYNNKNSFLDVLPEIKELSIDTLKNKFFPIVNALFDFLAYTYNSGFSKLDLEKYVENILDMLTNDILFDNFFHNYLTHIKLLRAKRKFACVFQRRLETDCFWVW |
| Ga0164278_142825 | Ga0164278_1428251 | F071833 | TKQNILNYLLTMNFVNDSTQDPQQRINFAQVLIKRKLIEPFEKLSRENVECYNLEKGAKEGNGQYIERVNKCLDSWQRHFERVEEKTNKYLISLREKEAHHFSKLFHCTNAINEPEVQACRIEENERFANELKETFSQL* |
