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Sample 3300013049
3300013049: Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig OP (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300013049 Open in IMG/M GOLD Reference Gs0127392 | Gp0191769 | Ga0164286 Sample Name Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig OP (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 30750883 Sequencing Scaffolds 3 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds Not Available 1 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa Type Environmental Taxonomy Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
Location Information
Location USA: Emeryville, California Coordinates Lat. (o ) 37.83 Long. (o ) -122.29 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F001904 Metagenome / Metatranscriptome 619 Y F006133 Metagenome / Metatranscriptome 380 Y F019939 Metagenome / Metatranscriptome 226 Y F031471 Metagenome / Metatranscriptome 182 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0164286_106906 Not Available 1101 Open in IMG/M Ga0164286_123116 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii 1228 Open in IMG/M Ga0164286_135099 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii 598 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0164286_106906 Ga0164286_1069063 F031471 MRLTGFEAIEYAEKEGLTLHKSEDEFDPARSNLTIAEAEAIATEDPDLIWLEVPEDEYYGERKNMEPNR* Ga0164286_112031 Ga0164286_1120311 F019939 APATAAASVSLIESFAFTSPADEQRIVSLVETAASADARAQALPTVFDSGREASRRFRHTDILAHRAGRARFTQVRANQPGQDTDATRAAYLRLYSTVYASFETLCAKRMPLAYLPYCNDMLKSYRFFAQGVNYGDRAEQICMNGNFCDSRSYIRRVTHNTYQREPGDA* Ga0164286_123116 Ga0164286_1231161 F001904 MSSSRFVLLALVALLASLAYVSATSDFLQAVAAVEGDCHPECRWQCDDPVCPAVCHPVCERPKCQIHCEETECAKCKIHCDKPQCNVRCPKDLCEKKDCPKCETVCSPANCRTQCEAPAAVCTPMCEATKCDWKCKKPITCPKPKCELVCERPACDTRARTEGTKPGCCSCADQANLAATIRAANSLMEVDSEMSQMMPSFMEVMHTIKAKGQQGNDMCCKCAA* Ga0164286_135099 Ga0164286_1350991 F006133 MKASALLSLRALLALFALCVLAAPLLSALSATPERKAQDVEDCVACRYVWLQVEMDVGNSQIEENIYDSFTQNCIEAQKAPIFYPACQDMFDGIDDMIGDYMDGYTVNQVCENARLCR*
