NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013055

3300013055: Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C Kraft BY (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300013055 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127392 | Gp0191758 | Ga0164277
Sample NameEnriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C Kraft BY (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size33430965
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora1
Not Available4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata1
All Organisms → cellular organisms → Eukaryota2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003009Metagenome / Metatranscriptome513Y
F004248Metagenome / Metatranscriptome446Y
F005470Metagenome / Metatranscriptome399Y
F024692Metagenome / Metatranscriptome204Y
F030315Metagenome / Metatranscriptome185Y
F044934Metagenome / Metatranscriptome153Y
F049342Metagenome / Metatranscriptome146Y
F096377Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0164277_105068All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora1638Open in IMG/M
Ga0164277_116295Not Available814Open in IMG/M
Ga0164277_125173Not Available1029Open in IMG/M
Ga0164277_138229Not Available761Open in IMG/M
Ga0164277_143103All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata774Open in IMG/M
Ga0164277_155533Not Available844Open in IMG/M
Ga0164277_155772All Organisms → cellular organisms → Eukaryota543Open in IMG/M
Ga0164277_162050All Organisms → cellular organisms → Eukaryota686Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0164277_105068Ga0164277_1050682F044934MSTTISFTNLLITRRTLSMPGLRNRRVLLPFITIAFFLTMRMLALVTPVLGAAMIMLLLDRH*
Ga0164277_116295Ga0164277_1162951F030315CCELVIKYDEFTAIFLSENSLQIKNDAEALKYSYRIGLDTLLVYTLNDGY*
Ga0164277_125173Ga0164277_1251731F024692MGLCSSKAVDDGPGLGASQKSSAVSEAKENGNKDFRETLRTVVLLVLNRLATALEYEQEGFSELATKLEMKNYMQLCAPQHFEAVIKETWDLDRTPPEKPEVPSDHISFAQNKFIKLLEAAEKADWRDPSISAQELTDRIQEAAKATQKVLRDSAIASDSSDLKIHLFFFAKCLEVVDGDIAAHHELLYSNIDDLTEPK*
Ga0164277_138229Ga0164277_1382291F004248MTNIVSYGQYLDKKQIYDIVPYIDIKPEDLGTSDTYHEDKILQKFMSYKEDDRILIYKAALQLSIVGYGNKNYGFVRINDKDIIMLEDIFKRYNIKYMEKINAKYNDDDLSVRRLLRLFRFQIQDFIRTHNRPSFLWLKYAEKINKDFMYICFPGGEHLIETKEEAEFFLNTYGNLDNIINSKFRQRLQRIFIARNILQPQYFIDKNY*
Ga0164277_143103Ga0164277_1431031F003009YFNVNIGNLVKYFSILTVAFHDVHSLFGFFILLVVFSQLISGTMLSFSLVPESMMVPIVRDEEDLEDLYTDDFFWVHERGVDLLFIFS*
Ga0164277_155533Ga0164277_1555331F049342YNNKETFIDLLPELKALSIDVTKNKFFAILNAIFDFMAYTYNSGFSKTDLEKYVETILDMLTNDILFENFFQNYVAHLRIIRAKKKFAFLFQRRLETDCFWVWSFSFLASMKNHYLGLLLSFEETFLEGGLILKWKNTESWVNNFIAFCYEKGIGTRKNLAKAAQLYKKDIDQMPRVLYSRYRKVLVVKEKRAHGLQLSQEEENINVDEQAEDLKLKIEERLEDTTRMDCYLFYVYGKIYEKIDEDNDRAIEWYQKGVDVDTDSCLKNHLLCNEAWRLKCK
Ga0164277_155772Ga0164277_1557721F005470NTDMSVKVRKEGQVITEFPTDMVPRSRLLTKLVEEFNSTEVDLEPAPGKDFSPATINKVKEFLEKFEKGLHKMPKKPLLIFVTYNDWLDNNFDEKTREWLEDFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGVVTQYQDFFTPEEELKFIEKEFINKN
Ga0164277_162050Ga0164277_1620501F096377EDKNEYLPSIDAKHSTNIFTTSLLNLIYRWKSFNVTHHKVAGKDRKYLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEEIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRLPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAHHE*
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