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Sample 3300013067
3300013067: Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C BE-Lig OP (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300013067 Open in IMG/M GOLD Reference Gs0127392 | Gp0191757 | Ga0164276 Sample Name Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C BE-Lig OP (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 58126967 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium 1 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii 1 All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa Type Environmental Taxonomy Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
Location Information
Location USA: Emeryville, California Coordinates Lat. (o ) 37.83 Long. (o ) -122.29 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F006133 Metagenome / Metatranscriptome 380 Y F036417 Metagenome / Metatranscriptome 170 Y F064866 Metagenome / Metatranscriptome 128 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0164276_142151 All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium 1259 Open in IMG/M Ga0164276_162232 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii 559 Open in IMG/M Ga0164276_190504 All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes 1222 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0164276_142151 Ga0164276_1421511 F036417 MVYYARIPLRRLIPTVLVRLSTDDGVITFRARWKHSPLELQRFILFRLRKGRMLWFEDEWGHDLCFRPERILGAMVDGRETKELEWV* Ga0164276_162232 Ga0164276_1622321 F006133 MKASALFSLRALLALFALCVLAAPLLSALSATPERKAQDVEDCVACRYVWLQVEMDVGNSQIEENIYDSFTQNCIEAQKAPIFYPACQDMFDGIDDMIGDYMDGYTVNQVCENARLCR* Ga0164276_190504 Ga0164276_1905042 F064866 LYPLLSSAQPEENDSLAKYSYPIFAVTGKQQFTGTAFFYHSGDTTYLVSNYHAIKGMSPLKKAITFNSDTLYLKYSAKDSGGSKILPIDVSDAAIGETEIFSMVDRIDLLKIPLELPDGADIHFINDLIDPAYLNAVPEEVVVFGFPTGPGNIPPFYSQQQKLAGKVNQQGVADYDASLKVNFPGSSDSARAILSGTARYYYFIKPYAAQGYSGAPVFGKFRTADGQIVYRFTGVVFAGQPMTRQTWAIKGSVALQYLMGEL*
