NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013782

3300013782: Marine microbial communites from Sargasso Sea - Prochlorococcus B258 surface rep 1



Overview

Basic Information
IMG/M Taxon OID3300013782 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118605 | Gp0137433 | Ga0120045
Sample NameMarine microbial communites from Sargasso Sea - Prochlorococcus B258 surface rep 1
Sequencing StatusPermanent Draft
Sequencing CenterUCI
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size4311040
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001416Metagenome / Metatranscriptome699Y
F007227Metagenome / Metatranscriptome355Y
F008886Metagenome / Metatranscriptome326Y
F017293Metagenome / Metatranscriptome241Y
F068232Metagenome125Y
F097154Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0120045_100085All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium1603Open in IMG/M
Ga0120045_100189All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1217Open in IMG/M
Ga0120045_100359All Organisms → Viruses → unclassified viruses → Circular genetic element sp.997Open in IMG/M
Ga0120045_100419Not Available935Open in IMG/M
Ga0120045_101094Not Available638Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0120045_100085Ga0120045_1000852F097154VAVDRRRLRKGDSYTPTSRGPALAKQRAASYRYNKQYKPFRTEQSPGTGGFGSGLETQIMRNQTKQFDRERAESLRPETEIQQSILDKIKTAGYQD*
Ga0120045_100189Ga0120045_1001892F001416MPLVKKRLFLTAGSTSDQVLAGSTYEYVDPNTVIRVAAAVDTAGTSATADTTMDFTVNNAEFSRNVSVSKLVDGEPFGASENSNYI
Ga0120045_100359Ga0120045_1003591F068232MEYVNLIALACSFAAFVLSIIAGARVGKFQRSTADTDWA
Ga0120045_100359Ga0120045_1003593F008886EGEPFGASENSNYILNNMVTTGAIRNRPIITFTNSTAATRTVDVAVFIGN*
Ga0120045_100419Ga0120045_1004192F007227MKKLTKEEIGYKTTDKIRKMWLLNPHDHHMLYVRDDGSFYGFTHMKGEDPEEWFWEAHGIQTELFPPDPPKSHKFTQEQLDRAPHHNILEKYYGKDWKPVPQEGLGDHF*
Ga0120045_101094Ga0120045_1010941F017293ILTYINTAALVVAVGGGTFAYFQRGKITESIMTEVQKQLPSLVKGAMPSIPSVPSSTGSVLPFK*
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