Sample 3300013871

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300013871

3300013871: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In4-11 gowning area SPAdes reassembly

Overview

Basic Information
IMG/M Taxon OID	3300013871 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095512 \| Gp0111883 \| Ga0181466
Sample Name	Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In4-11 gowning area SPAdes reassembly
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	87905619
Sequencing Scaffolds	22
Novel Protein Genes	27
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Solanales → Solanaceae	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
Type	Engineered
Taxonomy	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Surface (non-saline)

Location Information
Location	USA: Jet Propulsion Laboratory, Pasadena, California
Coordinates	Lat. (^o)	34.1	Long. (^o)	-118.1	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F002959	Metagenome / Metatranscriptome	517	Y
F017428	Metagenome	240	Y
F023843	Metagenome / Metatranscriptome	208	Y
F028713	Metagenome / Metatranscriptome	190	Y
F032009	Metagenome / Metatranscriptome	181	Y
F033665	Metagenome / Metatranscriptome	176	Y
F044253	Metagenome	154	Y
F045048	Metagenome / Metatranscriptome	153	Y
F049431	Metagenome / Metatranscriptome	146	N
F054337	Metagenome / Metatranscriptome	140	N
F057039	Metagenome / Metatranscriptome	136	Y
F065766	Metagenome / Metatranscriptome	127	Y
F072954	Metagenome / Metatranscriptome	120	Y
F077757	Metagenome / Metatranscriptome	117	N
F088701	Metagenome / Metatranscriptome	109	N
F096629	Metagenome / Metatranscriptome	104	Y
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0181466_1000188	Not Available	21824	Open in IMG/M
Ga0181466_1000229	Not Available	20393	Open in IMG/M
Ga0181466_1000315	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	18046	Open in IMG/M
Ga0181466_1000359	Not Available	17120	Open in IMG/M
Ga0181466_1001102	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales	9169	Open in IMG/M
Ga0181466_1001206	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	8573	Open in IMG/M
Ga0181466_1002471	Not Available	4828	Open in IMG/M
Ga0181466_1002667	Not Available	4536	Open in IMG/M
Ga0181466_1002958	Not Available	4125	Open in IMG/M
Ga0181466_1003107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae	3926	Open in IMG/M
Ga0181466_1003557	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	3450	Open in IMG/M
Ga0181466_1003878	Not Available	3170	Open in IMG/M
Ga0181466_1005086	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	2491	Open in IMG/M
Ga0181466_1007415	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea	1790	Open in IMG/M
Ga0181466_1008685	All Organisms → cellular organisms → Archaea	1556	Open in IMG/M
Ga0181466_1009584	Not Available	1435	Open in IMG/M
Ga0181466_1010266	Not Available	1353	Open in IMG/M
Ga0181466_1014359	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	1029	Open in IMG/M
Ga0181466_1018436	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Solanales → Solanaceae	843	Open in IMG/M
Ga0181466_1025949	Not Available	645	Open in IMG/M
Ga0181466_1026582	Not Available	633	Open in IMG/M
Ga0181466_1027998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181466_1000188	Ga0181466_100018819	F044253	MLLEYIPTKEQDADILKKALLRCKFEFHRDMNWVANNPFHVEREC*
Ga0181466_1000229	Ga0181466_100022928	F065766	MADEKNDKGAGDPIKILLEEALERQQNAMMDSFAQIL*
Ga0181466_1000315	Ga0181466_10003155	F032009	MKLLLCTLILLAGYTSFSQTYISLAPSFTNTPGTIPEKSNIALEIGQQWDVFSMGIDVGKTTLARMPHGDTSFYAELRPNLNVFQQGKFTNTFTAGIGCIFNAKEYLLTELTNGIEYAYSTKLHFNVFFGQYFYSGRASASDATFFGVSAAFYFSETTVGSLIKGAVK*
Ga0181466_1000359	Ga0181466_10003591	F002654	KVVCPKGNSPEQVFKVPKLLLSEIKEVFFKYNQEIGLEAAIF*
Ga0181466_1000581	Ga0181466_10005818	F072954	LIKRTKAEDFFMGDKVLRWDSRREDKGKHGKFDFLWRGPYVIQVVQGNNTYFLKRLDGTEAEDGPVNG*
Ga0181466_1000832	Ga0181466_100083216	F072954	MFDKRTQAEDFFIGDKVLRWDSRREDKGKHGKFDFLWKGPFIIQVLQGNNTYFLKSLNGTEAEDGPVNGRMLKHYFDLL*
Ga0181466_1001102	Ga0181466_100110215	F088701	VAVVLKRPEKIPVPLFKNRKNKLSYAIKAEISKIVIMALEHNIDLSRLSVIELDKSKMINGLINT*
Ga0181466_1001206	Ga0181466_100120610	F077757	MNTNYYFFIIPLISGVSILSFFSLINIYPQNSEISVIVQLTNGDKFIGQTWDINAQLKDKSSNSEISKDQTTFKVNQNQTIQMILPLSNSTQDLNRYSIFVDASSTIDDIDVFGTIDSLTNDNNQITLNLTKAR*
Ga0181466_1002046	Ga0181466_10020461	F096629	METPSKQPKISSMSHEEEEEMQHDISKLREKMQQLSLSQKVTEAKM
Ga0181466_1002471	Ga0181466_10024715	F033665	MKIGGEAKAHEISKNQKWFGQILTSLGDIKIINIFNGVPKSKLRKNKILMGINIKLGSKVPKAIDQAKT*
Ga0181466_1002667	Ga0181466_10026672	F044253	MLLEYIPLEEQDANILTKALSRCKFEFHKDKIGVTNNPFLVEREC*
Ga0181466_1002958	Ga0181466_10029583	F033665	VLIWGIIGCALATKFGGEVGAHEISNTYKGCGKILNRSGDIKIINIFNGVPKSKFMENKILMCINMNLC*
Ga0181466_1003107	Ga0181466_10031071	F103436	MIVASKKSWCDKSESEIFDNLREWVITCDLKYSKDDALDKIARASALWGGADYVTAVHLLDENEPYFKKSDWPYYSIGIEILKARKYEFFEE*
Ga0181466_1003557	Ga0181466_10035574	F045048	VFNKGNSKGLIDSIPKGGHLAPNSTVGDKALWKNDQNMAKKNKATPILIPLCTAKV*
Ga0181466_1003878	Ga0181466_10038788	F023843	MVRSGKIEIEKFNGKSFELWKLKMEDLVVDKDQWIGVDPSIEPMTMSNEDWEKLDRQAKTTI*
Ga0181466_1005086	Ga0181466_10050862	F049431	HMTTGRINQVTILSPSAEAHERTPRRRPGCTGRKGRRRSEPQPQASQVCETPEPQATDSIAPTEFPKLRSATGGIRLLHRSLHRYIRPSGGEDSRQVNAQARVLDRAIPEDLVKRLAKPVIHRPQMLPANRETNRTSVPSTSTLRLPEGRQHRASRKESPSPK*
Ga0181466_1007415	Ga0181466_10074154	F017428	MANQQKIISMGRLQGITVDIEGASTLADFEVIEFIDDSNPYPVLLGIDWATNMNRVINLKKHKMTFEKKSLRVIIPLDPVEGSRYSELVHNYESEDDLDCIYKITA*
Ga0181466_1008685	Ga0181466_10086851	F054337	MYSVIGSVIFLNLGLFQEGLAQNLINSNLPTPNDTEIQDINNQSTDKDNGLANVPLVINITKNSNATETVIDFIINQVNSSVVDISVLEDLAKDRIPLLIDTLKNTNASSIAAEYVLNTTKNEILTNTTSS*
Ga0181466_1009584	Ga0181466_10095841	F033665	MKFGGEVGAHEISNTQKGFGQILNRSGDIKIINIFNGVPKSKFRENKILMCINMNLC*
Ga0181466_1010266	Ga0181466_10102661	F057039	MDVDGIVVVVEVNGKDNMEFGMEDIEENIDDIMDGSHKFLSNLVSVIGFGVEMDNVAKERVCSIYFEVDVHKLEIVNYDIVSYQAK*
Ga0181466_1014359	Ga0181466_10143591	F045048	TVTPDDNNITVFSKGNSKGLIASIPIGGHIAPNSTVGDKALWKNAQKIAKKNKASDTINKATPIFIPLCTAKV*
Ga0181466_1018436	Ga0181466_10184361	F044253	MLLEYIPTEEQDAGILTKSLSRSKFEFHRDKTGVADNPFLVEREC*
Ga0181466_1022405	Ga0181466_10224052	F096629	MKTPSKEPESSSMTHEEEEEMLHDISKLQEQVKQKSHLQKLR*
Ga0181466_1025949	Ga0181466_10259491	F028713	KVLLVKVDTLKNTADALTKSVSSEKFSWCRETMGVSGLKK*
Ga0181466_1026389	Ga0181466_10263891	F096629	MSTPGKKPESSSMTYEEEEEMQHDIAKLRDQVQQVSLAQKGTEAK
Ga0181466_1026582	Ga0181466_10265821	F044253	MYVWTEEHYADILTKALSKCEFEYYRDRIGVIDSPFLVEREC*
Ga0181466_1027998	Ga0181466_10279982	F002959	MRDSIPKYVTQARAAFLLGMPVAEIHRISLEAGLGHLERAGNFEELYLTYDELKKVCALASEPAMATH*

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