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Sample 3300013880
3300013880: laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 40C L3 15gl 40C L3
Overview
Basic Information
IMG/M Taxon OID 3300013880 Open in IMG/M GOLD Reference Gs0128767 | Gp0208155 | Ga0181298 Sample Name laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 40C L3 15gl 40C L3 Sequencing Status Permanent Draft Sequencing Center UNIVERSIDADE DE SAO PAULO Published? N Use Policy Open
Dataset Contents
Total Genome Size 37539654 Sequencing Scaffolds 3 Novel Protein Genes 5 Associated Families 5
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria 1 Not Available 1 All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin088 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Microbial Communities From Methanogenic Microcosms From Oil Petroleum Samples Type Engineered Taxonomy Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Laboratory Microcosms → Microbial Communities From Methanogenic Microcosms From Oil Petroleum Samples
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Subsurface (non-saline)
Location Information
Location Newcastle Upon Tyne, United Kingdom Coordinates Lat. (o ) 54.97825278 Long. (o ) -1.61778056 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F021262 Metagenome / Metatranscriptome 219 N F024321 Metagenome / Metatranscriptome 206 N F024777 Metagenome / Metatranscriptome 204 Y F025938 Metagenome / Metatranscriptome 199 Y F066219 Metagenome / Metatranscriptome 127 Y
Sequences
Scaffold ID Protein ID Family Sequence
Ga0181298_100463 Ga0181298_10046310 F024321 MLEEILKLIAGMAGLGAFTSMLINLLKAVGLVKDGQSEEAFKIADLVIFVIVTIIYLTKTPLDWAQVDEWLVLLTALLGYVVSVFSGEFTHDTIKGTPLIGYSYSEKKPKG* Ga0181298_100463 Ga0181298_10046311 F021262 MSNKYYVKLMTGREFTGTAKEIVTQLRNESRLLAITPRKYARLVAKSYEMSTGLKLRTWTYNSFVKSLGKSLMVMEFKEVK* Ga0181298_103359 Ga0181298_1033592 F066219 MKKMLVIVLVIAVTSLSFANLVEFFDSIPPALKFGTGAVIGIYGLSWAYPWFFDPIVIVGDTEFGAFCFGPFIVISPYLWNEASEDSRNIVLNHEYVHYIQHAIYGPILSLSYPILAAYSTLKTGNQWDANLWELQAIELSDSSKPAWQPSFVIELE* Ga0181298_103433 Ga0181298_1034331 F024777 MKGVKMDADLIFAEDVEVCPKCGSSEFWENRIIWVGDDPTDEELASIECKRCGAVFYARDYYRRRFGKLEDDYEEIPF* Ga0181298_103433 Ga0181298_1034333 F025938 MAIIIPDKIVDLLSSMFEDVRDKQFIIGDTLIEIVNAMGDKGGTITYLAGRLGVSASTLYDYYRIAKLWTPEYRAMYQALDWTIYRNADPNDPEDRVLLDRCVDEQWSSATFKENKYPALKDPNTIIGKMVSLGKRVYAQDTLEIEHREAILKAINILEKVMRELEVMEFADVKF*
