NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014053

3300014053: Contaminated water microbial communities from Hexachlorocyclohexane (HCH) contaminated sediment in Lucknow, India - Pond Sediment



Overview

Basic Information
IMG/M Taxon OID3300014053 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118595 | Gp0137314 | Ga0119956
Sample NameContaminated water microbial communities from Hexachlorocyclohexane (HCH) contaminated sediment in Lucknow, India - Pond Sediment
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Delhi
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size231567166
Sequencing Scaffolds18
Novel Protein Genes18
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria3
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameContaminated Water Microbial Communities From Pond Sediment In Lucknow, India
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Pond → Sediment → Contaminated Water → Contaminated Water Microbial Communities From Pond Sediment In Lucknow, India

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → pond → contaminated water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationIndia: Chinhat, Lucknow
CoordinatesLat. (o)26.5389Long. (o)81.2022Alt. (m)N/ADepth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000842Metagenome / Metatranscriptome865Y
F004285Metagenome / Metatranscriptome445Y
F007038Metagenome / Metatranscriptome359Y
F007482Metagenome350Y
F008263Metagenome / Metatranscriptome336N
F008391Metagenome / Metatranscriptome334Y
F017920Metagenome / Metatranscriptome238N
F023369Metagenome / Metatranscriptome210Y
F028546Metagenome / Metatranscriptome191Y
F034114Metagenome / Metatranscriptome175Y
F035931Metagenome / Metatranscriptome171Y
F041511Metagenome / Metatranscriptome160Y
F051390Metagenome144Y
F056160Metagenome / Metatranscriptome138Y
F056509Metagenome / Metatranscriptome137Y
F063965Metagenome129Y
F088925Metagenome / Metatranscriptome109Y
F095305Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119956_1000464Not Available3051Open in IMG/M
Ga0119956_1001214All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1918Open in IMG/M
Ga0119956_1005316All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria816Open in IMG/M
Ga0119956_1007992All Organisms → cellular organisms → Bacteria → Acidobacteria687Open in IMG/M
Ga0119956_1008549All Organisms → cellular organisms → Bacteria670Open in IMG/M
Ga0119956_1009415All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium648Open in IMG/M
Ga0119956_1010962All Organisms → cellular organisms → Bacteria618Open in IMG/M
Ga0119956_1011642Not Available606Open in IMG/M
Ga0119956_1011862All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium603Open in IMG/M
Ga0119956_1012351All Organisms → cellular organisms → Bacteria596Open in IMG/M
Ga0119956_1015177Not Available562Open in IMG/M
Ga0119956_1016126All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium553Open in IMG/M
Ga0119956_1016375All Organisms → cellular organisms → Bacteria → Acidobacteria551Open in IMG/M
Ga0119956_1018142Not Available536Open in IMG/M
Ga0119956_1018465All Organisms → cellular organisms → Bacteria → Acidobacteria534Open in IMG/M
Ga0119956_1020571Not Available519Open in IMG/M
Ga0119956_1021218All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium515Open in IMG/M
Ga0119956_1021896All Organisms → cellular organisms → Bacteria511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119956_1000464Ga0119956_10004644F034114MPVILKETSVAAGAVNENILAGSAFEFARQNSLVSIGIHQSATGGFATIQAGADIVAEEFSVPIATTYPVIPDNMYFSDVAAAGDRLVIRYRNPTGGALVVRVVAQVTPL*
Ga0119956_1001214Ga0119956_10012141F000842MLDLLGVEGGGTLGQSNAEQERPYLAAWSGKDRAYKAGRQKARGAGRESERSIVPGKAWNTTRWREGALL*
Ga0119956_1005316Ga0119956_10053161F004285RVRNGEDQMSLSWISNRSLRVSPRVRLVADGEAEALRRKLEQLDWKPQNGFLKDQVAERSPVTASRGNRAA*
Ga0119956_1007992Ga0119956_10079921F035931RNQYRNGELTSCSTDHEWLWITTLDRQAFPAATIRQLGHSRWRQENNGWMDLTKHWAFKHGFLHACRHRPKYIDASGHRVLVPNRGLAAVTLILLIAFALSSAFLLRHSKLARLDHLTGLAVASQLRSWISKAPPSIRAPD*
Ga0119956_1008549Ga0119956_10085491F007482RHVFINRDSHPDADIYVAIHEAKDLPSPVPDYQVPHCHNTDEFYYFIGHHPDLTGLEGQIIFEGKVHKIVSPACVYIPTGTVHEYKVTRGAGTVTVLFRNRGYTHEDKPFDIAKGERDFSRYAGYIFQPEVRPTTEIKHHSDAAPGTRYVFVDGSLKPRVEGGKNGDGGAAHSTDICGSKPDSAPRGS*
Ga0119956_1009415Ga0119956_10094151F007038MWIGLADEEGRSWYGISSEVEIDPSTNDFISGAFRLITPDEARMSRQQLAAAVVDFCGHVDEFWAWIPTVERFAEWFGLGDEAAEVFDRCWNIDLQMLRALVNPWPRGWPNRLHNLNAAAVAAGVEIPRRAANHLHPRVHAEWNRQLFELIRATGSL*
Ga0119956_1010962Ga0119956_10109621F017920AIDPTRITTVALGRGESITKTVKELTDGLGASVLAELVPGGIESTLECIKNLEPGGRVALIAPNPEPLNLPLRYLMIRSLEFTSVTGRFAMDIAELLQLVERGVIDTRHITTRYFPLSAVNEALDYINERGDNDPLWPMYAAD*
Ga0119956_1011642Ga0119956_10116421F056160MLATVVSLLMLLTPLAQEQQNAPLAFEVRAAANRQFGKGQTTGLQYYDVPITRQPGSGILIKLDYTRRNTTFSFDLHHRLSLDPEFEYPAEIITNVEVLSGGTTSIGTFTVIDTIKAGDVFEEAIDKVSTAEVDRYVTPFGKKTVTLKLGSGSQSISIVGQSVIIT
Ga0119956_1011862Ga0119956_10118621F088925MQERKCSKCGSVNVYKSIGNNWHQEGIILQIIAEDSFHDVFQTEAFLCLDCRNLEIQVMETSTMYGKQKSLVDTVQASNNWVKA*
Ga0119956_1012351Ga0119956_10123511F028546MLFLKNTPVNQILSIGEMIDVIEDTLKEIASGRGFDLPRRRIHHPNRMILGILPGSVHGAMGAYIQTDLDRRSACR
Ga0119956_1015177Ga0119956_10151771F023369MRFSLLEPEFGWGEKDEPGPQTEDSRERGFVRNANLDEKMGHSDSLDLDDVGDVADEGPGRRG*
Ga0119956_1016126Ga0119956_10161261F051390DWYGDTFGLVVGDQVPGDDQLTLTVAKSNQLVILRKVDKVADRSTQCYRGPHVDLRSDEASYPEMLKRFNRKETYWGPDPNLIPWHEPDTNTAYGYDPFGNQLFLRVRERIC*
Ga0119956_1016375Ga0119956_10163752F008391WCGCLRRVSLFLTFRDSPDKPFSRWKGKLINDPIATIVRDGQVVGVWEWNAVKDDIDLILFESTPKPVEKAIRKRATALAEFIRHDLGQQPRLHGLDFGPHQMTCIHDLKAFWGRGAQVDIHAV*
Ga0119956_1018142Ga0119956_10181421F063965MEGRSFLRRKDREALRERWLLRAGKAFERMFGEANQDQLVTFTEREDMAVLLSKELAAFLLEEHAAADRQVRPSEKHAPNCPKCSKPGVRVTKASEKLPERELTTRAGEVKLRREQWRCAKCRVNFFSVRPQAQAGDRRLQSADSGESRAAGEQGGIVQRGE*
Ga0119956_1018465Ga0119956_10184651F008263GPVIEGFEDCALGEFIKAQLEALSHNGEPPARCEIHGLDPFLELAEPEDPDRLRDLISVCEFRVNEFTPESAVRFLKESGFFDEYIIVGVKRGSGWRRSRCITTFEGRPGDAATILGHLAEYFGKETQDDKPHDDRKA*
Ga0119956_1020571Ga0119956_10205711F041511KEIKMTLVQKRINGTEYYTDDKVYYTFHKVKDTADTLWNFACMELGITKKSGFNSQETKAITDLAGISSLHPTKFLLLKEGNAVPVPYLPNGSADLHPDDIILRATVDPAAKPIAPSVVTVVPPSSLTKSVADRLKEIEDLLAMKLLSEPEYQDKRAKVIAEL*
Ga0119956_1021218Ga0119956_10212182F095305MTGSLSRFWIGLIVLAVALTCADAASAQRKVRFAYPSSADLGDIPSLLAWEQLKKQGIEVVPTFFPKTDLAVQAVVAG
Ga0119956_1021896Ga0119956_10218962F056509MINFRRTGGADREMTRDFELSSLPEAAANRLQSLLSQSNFFEIPTINDLRVGPEEHAYSITVVAGNSLHTVNVSDTSMPRSLRLL
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