Sample 3300014104

Overview

Basic Information
IMG/M Taxon OID	3300014104 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121296 \| Gp0151528 \| Ga0134356
Sample Name	Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_010
Sequencing Status	Permanent Draft
Sequencing Center	The George Washington University (GWU)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	20133404
Sequencing Scaffolds	4
Novel Protein Genes	4
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	USA: Maryland
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F035108	Metagenome	173	Y
F076912	Metagenome	117	Y
F094706	Metagenome	105	Y
F103431	Metagenome	101	N

Family

Category

Number of Sequences

3D Structure?

F035108

Metagenome

173

F076912

Metagenome

117

F094706

Metagenome

105

F103431

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0134356_104472	Not Available	850	Open in IMG/M
Ga0134356_105299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	780	Open in IMG/M
Ga0134356_106709	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	689	Open in IMG/M
Ga0134356_107035	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	672	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0134356_104472

Not Available

850

Open in IMG/M

Ga0134356_105299

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria

780

Open in IMG/M

Ga0134356_106709

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae

689

Open in IMG/M

Ga0134356_107035

672

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0134356_104472	Ga0134356_1044721	F076912	LEKSTPLCNGKGSNADKVQDSETSLLVSKKADKNYLDDSEGTQKSCLDVVFELLATTAGTSSSNSLPESVRLLESQLQVERHRSDVLRQEAEGLRKSLQNSDAYFLVQQQVLEDLSAKQEKVNKLAKHLASIMGTQDIVS*
Ga0134356_105299	Ga0134356_1052991	F103431	MIDFDALIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAEDDDDKDAE
Ga0134356_106709	Ga0134356_1067091	F094706	VGLAHGGFEFLKGSFEGLKGYAVGRMTKSRRGKLYIDDAGWGPEAGSIEYGYRVPFGSIHVFIGKIGEPGPEPDIFTDLVETAQRARPARALPGLKRAFVGCVHGGLSEGSGSGDETAAGSDGESSTSNSLYQLQDGRLMGCSDGDSIPDLFEPPSQVGVFMAG
Ga0134356_107035	Ga0134356_1070351	F035108	MLTGRPAEEMPGSTGDLLPELSQLHEQVRQVMQGVAQALWPSVSLLEGVAELAEKLKGARRRFRLWKISACRQGAREAWAMVKTRYKKADPNHMAEVGPVGPDGKEIPVSLVYGQVELAAKYSQQDCRLDI

Scaffold ID

Protein ID

Family

Sequence

Ga0134356_104472

Ga0134356_1044721

F076912

LEKSTPLCNGKGSNADKVQDSETSLLVSKKADKNYLDDSEGTQKSCLDVVFELLATTAGTSSSNSLPESVRLLESQLQVERHRSDVLRQEAEGLRKSLQNSDAYFLVQQQVLEDLSAKQEKVNKLAKHLASIMGTQDIVS*

Ga0134356_105299

Ga0134356_1052991

F103431

MIDFDALIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAEDDDDKDAE

Ga0134356_106709

Ga0134356_1067091

F094706

VGLAHGGFEFLKGSFEGLKGYAVGRMTKSRRGKLYIDDAGWGPEAGSIEYGYRVPFGSIHVFIGKIGEPGPEPDIFTDLVETAQRARPARALPGLKRAFVGCVHGGLSEGSGSGDETAAGSDGESSTSNSLYQLQDGRLMGCSDGDSIPDLFEPPSQVGVFMAG

Ga0134356_107035

Ga0134356_1070351

F035108

MLTGRPAEEMPGSTGDLLPELSQLHEQVRQVMQGVAQALWPSVSLLEGVAELAEKLKGARRRFRLWKISACRQGAREAWAMVKTRYKKADPNHMAEVGPVGPDGKEIPVSLVYGQVELAAKYSQQDCRLDI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300014104: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_010

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences