Sample 3300014109

3300014109: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_110

Overview

Basic Information
IMG/M Taxon OID	3300014109 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121296 \| Gp0151519 \| Ga0134347
Sample Name	Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_110
Sequencing Status	Permanent Draft
Sequencing Center	The George Washington University (GWU)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	141754154
Sequencing Scaffolds	23
Novel Protein Genes	24
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	USA: Maryland
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F047508	Metagenome	149	N
F051988	Metagenome / Metatranscriptome	143	Y
F053092	Metagenome	141	N
F054110	Metagenome	140	N
F071328	Metagenome	122	N
F080164	Metagenome	115	N
F085820	Metagenome	111	N
F094007	Metagenome	106	N
F103430	Metagenome	101	N
F103431	Metagenome	101	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103436	Metagenome	101	Y
F105376	Metagenome	100	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0134347_1000001	Not Available	164314	Open in IMG/M
Ga0134347_1000724	All Organisms → cellular organisms → Bacteria	12103	Open in IMG/M
Ga0134347_1000961	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	10313	Open in IMG/M
Ga0134347_1001085	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	9499	Open in IMG/M
Ga0134347_1001699	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7326	Open in IMG/M
Ga0134347_1001855	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	6912	Open in IMG/M
Ga0134347_1002743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	5415	Open in IMG/M
Ga0134347_1003079	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4991	Open in IMG/M
Ga0134347_1004245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4049	Open in IMG/M
Ga0134347_1004381	Not Available	3984	Open in IMG/M
Ga0134347_1005369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3492	Open in IMG/M
Ga0134347_1006661	Not Available	2988	Open in IMG/M
Ga0134347_1008315	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2536	Open in IMG/M
Ga0134347_1011457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1994	Open in IMG/M
Ga0134347_1014424	All Organisms → cellular organisms → Bacteria	1667	Open in IMG/M
Ga0134347_1020503	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1247	Open in IMG/M
Ga0134347_1026981	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1002	Open in IMG/M
Ga0134347_1027084	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	999	Open in IMG/M
Ga0134347_1031122	Not Available	897	Open in IMG/M
Ga0134347_1036009	Not Available	803	Open in IMG/M
Ga0134347_1060906	Not Available	542	Open in IMG/M
Ga0134347_1062103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	533	Open in IMG/M
Ga0134347_1065673	Not Available	509	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134347_1000001	Ga0134347_100000158	F105378	MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKDAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTQEDGTLISPVFVDVQCVEYTGGDLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR*
Ga0134347_1000724	Ga0134347_10007249	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0134347_1000961	Ga0134347_10009611	F085820	MYPRDLKVFAAGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSEKGKK*
Ga0134347_1001085	Ga0134347_10010853	F080164	MRPTSFVLSLLLGVIGLAPCAAQQVTLRERASAFPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKSMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPILYKGQEGRLVLCEYYESHRGDLFLDVANAHPEIFGELRPVVDFHFSVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRL*
Ga0134347_1001085	Ga0134347_10010854	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPARAAWLISTDSLIHAAKVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSLRVVAVGDTIYRQKESDAQFNADLDALFHESIGIAPRLFGVRELSVLGIDRKGKPRDLGNYSCPLLQGKRQNVNYRTREGVFHEHYEAASVDTFSVKDDWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLR*
Ga0134347_1001699	Ga0134347_10016992	F043235	VDEFGTQLTDALFDRPDRSKRELHQGAVNGDDIVQLRYMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYTEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0134347_1001855	Ga0134347_10018552	F053092	MQSDQGLILCLTHAVLILGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHKWYAVV*
Ga0134347_1002743	Ga0134347_10027438	F103431	MIDFDALIVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAEDDNDKDAESQKEGFHVCIPEG*
Ga0134347_1003079	Ga0134347_10030793	F045567	MVTEDVVHTSTHRVEDTLLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSRERGCVVERVVR*
Ga0134347_1004245	Ga0134347_10042455	F103436	MITTSKDGWCGKSDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWANGQYVSALRLLDENEVFLKKSDWPYYALGIEILRVRKHEFLNE*
Ga0134347_1004381	Ga0134347_10043815	F105376	MGKIMNEKPEVSAKEFGALEADVRHIKESVDRHTTTLERIENIARANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTQVRRK*
Ga0134347_1005369	Ga0134347_10053694	F103436	MIVASKKRLCDKSEDEIFDSLRDWVLACDLKYSKEDALGKIDRASALWGAADYVTAVHLLDENEPYFKKSDWPYYALGLEILMARKREFFDE*
Ga0134347_1006661	Ga0134347_10066614	F103430	VEQITIKAFIGSNNETKELEIDKIASTLSKNHEAFTLQYPVFGYWKGETEQTAILYLSDERSKVLNTLNELKEVLDQEAIAYQLQDKLNLI*
Ga0134347_1008315	Ga0134347_10083152	F033081	MAWLFNRVMPTDSRPVFVWPKLVAAIEDTGNFGKRWLTAIATGLIIVTIATIKALLMIPGLDSSVVGLLTSIFETFLPARWATGAAWIVGATGVFLVGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHVTNIWYSFAAGIALSVTGFGFLMVYLWYYRKYRSQIIATAAAATVHALYNAIAISLIAAVVSCEPLSKSLLVMFAP*
Ga0134347_1011457	Ga0134347_10114573	F054110	VLDVNYQPAIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLMFPHKYKNGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD*
Ga0134347_1014424	Ga0134347_10144242	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGVEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEF
Ga0134347_1020503	Ga0134347_10205032	F033081	MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATVTAWTVGVVGVFLMGNFTNYTPSQKLIHRIKATRCEVYNTILLLALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0134347_1026981	Ga0134347_10269811	F094007	MKSKTVEVLELARPNRADVIDVVDSDGNVVSLDYLGEDFVPDANSYSDKDFTKRNRIIVEMCDLFGGTRRRAGFAEYYRGRGDYDRARRIERNRGSDISEVGRLAINACEACPLKLDCELYGKLGGAVLNKVIDYKSIRTATSLTKAGKKRPGWNKGCIDNDA*
Ga0134347_1027084	Ga0134347_10270841	F033081	MCPPDIAVVHRPQKGAMAWLFKKGMPQDPKPVFVWPRLVTAIKDVGYFSRRELSVLAVGLIIVTIVTIKTLLLVPELNQSVVGLLTHGLEAFLPAGWATGAAWVVGMAGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRSGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAV
Ga0134347_1031122	Ga0134347_10311222	F047508	VKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0134347_1036009	Ga0134347_10360091	F051988	DMATFLFTKLRELYTKTINYKLVSTLEKGYAGNVMDDLDLSNAPASLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYIAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIQEKAGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF*
Ga0134347_1060906	Ga0134347_10609061	F032313	KPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGINVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEEK*
Ga0134347_1062103	Ga0134347_10621031	F046431	LIIMLTYIQTLVFAVESELTLIPNPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFNNVDEEVKVLNIYPTIEGLPMVNVTYLDGHTETIPKSGLLKVWMEGRNSKRRWKYN*
Ga0134347_1065673	Ga0134347_10656731	F103430	MKLITIKAFIGSNNKTKKLEVDKIISTVSINHEAFTLDYPVIGCWRGEVEETAVLYLSDERSKVLNTLNELKEVLGQEAIAYQIENDLQLI*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300014109: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_110

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences